Package: xcms
Version: 3.0.0
Date: 2017-10-18
Title: LC/MS and GC/MS Data Analysis
Author: Colin A. Smith <csmith@scripps.edu>,
    Ralf Tautenhahn <rtautenh@gmail.com>,
    Steffen Neumann <sneumann@ipb-halle.de>,
    Paul Benton <hpbenton@scripps.edu>,
    Christopher Conley <cjconley@ucdavis.edu>,
    Johannes Rainer <Johannes.Rainer@eurac.edu>
Maintainer: Steffen Neumann <sneumann@ipb-halle.de>
Depends: R (>= 2.14.0), methods, Biobase, BiocParallel (>= 1.8.0),
        MSnbase (>= 2.3.11)
Imports: mzR (>= 1.1.6), BiocGenerics, ProtGenerics, lattice,
        RColorBrewer, plyr, RANN, multtest, MassSpecWavelet (>= 1.5.2),
        S4Vectors
Suggests: BiocStyle, knitr (>= 1.1.0), faahKO, msdata, ncdf4, rgl,
        microbenchmark, RUnit, pander
Enhances: Rgraphviz, Rmpi, XML
Description: Framework for processing and visualization of chromatographically
    separated and single-spectra mass spectral data. Imports from AIA/ANDI NetCDF,
    mzXML, mzData and mzML files. Preprocesses data for high-throughput, untargeted
    analyte profiling.
License: GPL (>= 2) + file LICENSE
URL: http://metlin.scripps.edu/download/ and
        https://github.com/sneumann/xcms
VignetteBuilder: knitr
BugReports: https://github.com/sneumann/xcms/issues/new
biocViews: MassSpectrometry, Metabolomics
RoxygenNote: 6.0.1
Collate: 'AllGenerics.R' 'DataClasses.R' 'Deprecated.R' 'MPI.R' 'c.R'
        'cwTools.R' 'databases.R' 'functions-MsFeatureData.R'
        'do_adjustRtime-functions.R' 'functions-binning.R'
        'do_findChromPeaks-functions.R' 'functions-Params.R'
        'do_groupChromPeaks-functions.R' 'fastMatch.R'
        'functions-utils.R' 'functions-IO.R' 'functions-OnDiskMSnExp.R'
        'functions-ProcessHistory.R' 'functions-XCMSnExp.R'
        'functions-normalization.R' 'functions-xcmsEIC.R'
        'functions-xcmsFragments.R' 'functions-xcmsRaw.R'
        'functions-xcmsSet.R' 'init.R' 'matchpeaks.R' 'methods-IO.R'
        'methods-MsFeatureData.R' 'methods-OnDiskMSnExp.R'
        'methods-Params.R' 'methods-ProcessHistory.R'
        'methods-XCMSnExp.R' 'methods-netCdfSource.R'
        'methods-rampSource.R' 'methods-xcmsEIC.R'
        'methods-xcmsFileSource.R' 'methods-xcmsFragments.R'
        'methods-xcmsPeaks.R' 'methods-xcmsRaw.R' 'methods-xcmsSet.R'
        'models.R' 'msn2xcmsRaw.R' 'mzClust.R' 'netCDF.R' 'plotQC.R'
        'ramp.R' 'specDist.R' 'write.mzquantML.R' 'writemzdata.R'
        'writemztab.R' 'xcmsSource.R' 'zzz.R'
NeedsCompilation: yes
Packaged: 2017-10-30 22:43:24 UTC; biocbuild
Built: R 3.4.1; x86_64-apple-darwin14.5.0; 2018-06-28 15:16:49 UTC; unix
