Package: VariantFiltering
Type: Package
Title: Filtering of coding and non-coding genetic variants
Description: Filter genetic variants using different criteria such as
             inheritance model, amino acid change consequence, minor
             allele frequencies across human populations, splice site
             strength, conservation, etc.
Version: 1.36.1
Authors@R: c(person("Robert", "Castelo", role=c("aut", "cre"), email="robert.castelo@upf.edu"),
             person("Dei", "Martinez Elurbe", role="ctb"),
             person("Pau", "Puigdevall", role="ctb"),
             person("Joan", "Fernandez", role="ctb"))
License: Artistic-2.0
Depends: R (>= 3.5.0), methods, BiocGenerics (>= 0.25.1),
        VariantAnnotation (>= 1.13.29)
Imports: utils, stats, Biobase, S4Vectors (>= 0.9.25), IRanges (>=
        2.3.23), RBGL, graph, AnnotationDbi, BiocParallel, Biostrings
        (>= 2.33.11), GenomeInfoDb (>= 1.3.6), GenomicRanges (>=
        1.19.13), SummarizedExperiment, GenomicFeatures, Rsamtools (>=
        1.17.8), BSgenome, GenomicScores (>= 1.0.0), Gviz, shiny,
        shinythemes, shinyjs, DT, shinyTree
Suggests: RUnit, BiocStyle, org.Hs.eg.db,
        BSgenome.Hsapiens.1000genomes.hs37d5,
        TxDb.Hsapiens.UCSC.hg19.knownGene,
        SNPlocs.Hsapiens.dbSNP144.GRCh37,
        MafDb.1Kgenomes.phase1.hs37d5, phastCons100way.UCSC.hg19,
        PolyPhen.Hsapiens.dbSNP131, SIFT.Hsapiens.dbSNP137
LinkingTo: S4Vectors, IRanges, XVector, Biostrings
URL: https://github.com/rcastelo/VariantFiltering
BugReports: https://github.com/rcastelo/VariantFiltering/issues
biocViews: Genetics, Homo_sapiens, Annotation, SNP, Sequencing,
        HighThroughputSequencing
git_url: https://git.bioconductor.org/packages/VariantFiltering
git_branch: RELEASE_3_17
git_last_commit: f9846cf
git_last_commit_date: 2023-06-26
Date/Publication: 2023-06-26
NeedsCompilation: yes
Packaged: 2023-06-26 22:47:11 UTC; biocbuild
Author: Robert Castelo [aut, cre],
  Dei Martinez Elurbe [ctb],
  Pau Puigdevall [ctb],
  Joan Fernandez [ctb]
Maintainer: Robert Castelo <robert.castelo@upf.edu>
Built: R 4.3.1; x86_64-apple-darwin13.4.0; 2023-07-15 21:23:30 UTC; unix
