##source=VariantTools 1.1.0
##phasing=unphased
##fileformat=VCFv4.1
##project=example
##fileDate=20121029
##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth">
##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=AR,Number=A,Type=Integer,Description="ALT read counts">
##FORMAT=<ID=RR,Number=1,Type=Integer,Description="REF read count">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Total read count">
##FORMAT=<ID=AAP,Number=A,Type=Integer,Description="Flags indicating which ALTs are present">
##FORMAT=<ID=RAP,Number=1,Type=Integer,Description="Flag indicating if REF is present">
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	H1993
TP53	1000311	.	T	A	.	.	DP=14;AF=0.5	AR:RR:DP:AAP:RAP	2:29:31:1:1
TP53	1011392	.	C	G	.	.	.	AR:RR:DP:AAP:RAP	540:41:582:1:1
TP53	1012027	.	T	C	.	.	.	AR:RR:DP:AAP:RAP	2:0:2:1:0
TP53	1012219	.	G	A	.	.	.	AR:RR:DP:AAP:RAP	2:0:2:1:0
TP53	1012654	.	A	G,T	.	.	DP=10;AF=0.333,0.667	AR:RR:DP:AAP:RAP	585,4:1:590:2,2:1
TP53	1013309	.	C	G	.	.	.	AR:RR:DP:AAP:RAP	934:0:936:1:0
TP53	1017504	.	A	G	.	.	.	AR:RR:DP:AAP:RAP	2:3:5:1:1
TP53	1017549	.	A	G	.	.	.	AR:RR:DP:AAP:RAP	2:3:5:1:1
TP53	1019784	.	T	C	.	.	.	AR:RR:DP:AAP:RAP	5:0:5:1:0
TP53	1019934	.	T	C,A	.	.	.	AR:RR:DP:AAP:RAP	3,1:0:4:3,3:0
TP53	1019935	.	G	A	.	.	.	AR:RR:DP:AAP:RAP	3:0:3:1:0
TP53	1019986	.	C	T	.	.	.	AR:RR:DP:AAP:RAP	3:0:3:1:0
TP53	1020710	.	A	G	.	.	.	AR:RR:DP:AAP:RAP	3:1:4:1:1
TP53	1020776	.	A	G	.	.	.	AR:RR:DP:AAP:RAP	4:2:6:1:1
TP53	1020811	.	A	G	.	.	.	AR:RR:DP:AAP:RAP	2:4:6:1:1
TP53	1020837	.	A	G	.	.	.	AR:RR:DP:AAP:RAP	3:3:6:1:1
TP53	1020838	.	A	G	.	.	.	AR:RR:DP:AAP:RAP	2:4:6:1:1
TP53	1021339	.	A	G	.	.	.	AR:RR:DP:AAP:RAP	3:4:7:1:1
TP53	1021340	.	A	G	.	.	.	AR:RR:DP:AAP:RAP	3:4:7:1:1
TP53	1021638	.	A	G	.	.	.	AR:RR:DP:AAP:RAP	2:21:23:1:1
