Package: TitanCNA
Type: Package
Title: Subclonal copy number and LOH prediction from whole genome
        sequencing of tumours
Version: 1.15.0
Date: 2017-05-10
Author: Gavin Ha, Sohrab P Shah
Maintainer: Gavin Ha <gavinha@broadinstitute.org>, Sohrab P Shah <sshah@bccrc.ca>
Depends: R (>= 3.3.2)
Imports: IRanges (>= 2.6.1), GenomicRanges (>= 1.24.3),
        VariantAnnotation (>= 1.18.7), foreach (>= 1.4.3), Rsamtools
        (>= 1.24.0), GenomeInfoDb (>= 1.8.7), data.table (>= 1.10.4),
        dplyr (>= 0.5.0),
Description: Hidden Markov model to segment and predict regions of
        subclonal copy number alterations (CNA) and loss of
        heterozygosity (LOH), and estimate cellular prevalenece of
        clonal clusters in tumour whole genome sequencing data.
License: GPL-3
biocViews: Sequencing, WholeGenome, DNASeq, ExomeSeq,
        StatisticalMethod, CopyNumberVariation, HiddenMarkovModel,
        Genetics, GenomicVariation
URL: https://github.com/gavinha/TitanCNA
Built: R 3.4.1; x86_64-apple-darwin14.5.0; 2017-11-16 18:01:24 UTC; unix
