TitanCNA-package	TitanCNA-package
computeSDbwIndex	computeSDbwIndex
convergeParams	TitanCNA-dataset
correctReadDepth	correctReadDepth
data	TitanCNA-dataset
EMresults	TitanCNA-dataset
extractAlleleReadCounts	extractAlleleReadCounts
filterData	filterData
getPositionOverlap	getPositionOverlap
loadAlleleCounts	loadAlleleCounts
loadDefaultParameters	loadDefaultParameters
outputModelParameters	TitanCNA-output
outputTitanResults	TitanCNA-output
outputTitanSegments	TitanCNA-output
plotAllelicRatio	TitanCNA-plotting
plotClonalFrequency	TitanCNA-plotting
plotCNlogRByChr	TitanCNA-plotting
plotSubcloneProfiles	TitanCNA-plotting
removeEmptyClusters	removeEmptyClusters
runEMclonalCN	runEMclonalCN
TitanCNA	TitanCNA-package
TitanCNA-dataset	TitanCNA-dataset
viterbiClonalCN	viterbiClonalCN
wigToRangedData	wigToRangedData
