# StarBioTrek

## Documentation for package ‘StarBioTrek’ version 1.6.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

StarBioTrek-package | Download data
average | For TCGA data get human pathway data and creates a matrix with the average of genes for each pathway.
ds_score_crtlk | For TCGA data get human pathway data and creates a measure of discriminating score among pathways
euc_dist_crtlk | For TCGA data get human pathway data and creates a measure of cross-talk among pathways
getKEGGdata | Get human KEGG pathway data.
getNETdata | Get network data.
GE_matrix | Get human KEGG pathway data and a gene expression matrix in order to obtain a matrix with the gene expression for only pathways given in input .
IPPI | Multilayer analysis Cava et al. BMC Genomics 2017
list_path_net | Get human KEGG pathway data and output of path_net in order to define the common genes.
matrix_plot | Get human KEGG pathway data and a gene expression matrix in order to obtain a matrix with the mean gene expression for only pathways given in input .
path_net | Get human KEGG pathway data and network data in order to define the common gene.
plotting_cross_talk | Get human KEGG pathway data and a gene expression matrix we obtain a matrix with the gene expression for only pathways given in input .
process_matrix | Process matrix TCGA data after the selection of pairwise pathway
proc_path | Get human KEGG pathway data.
SelectedSample | Select the class of TCGA data
select_class | Select the class of TCGA data
StarBioTrek | Download data
st_dv | For TCGA data get human pathway data and creates a measure of standard deviations among pathways
svm_classification | SVM classification for each feature