.compute_ssFC	dot-compute_ssFC
generate_permuted_scores	generate_permuted_scores
generate_permuted_scores,data.frame-method	generate_permuted_scores
generate_permuted_scores,DGEList-method	generate_permuted_scores
generate_permuted_scores,matrix-method	generate_permuted_scores
generate_permuted_scores,SummarizedExperiment-method	generate_permuted_scores
gsAnnotation_df	gsAnnotation_df
logCPM_example	logCPM_example
metadata_example	metadata_example
normalise_by_permu	normalise_by_permu
pathway_pert	pathway_pert
plot_community	plot_community
plot_gene_contribution	plot_gene_contribution
plot_gs2gene	plot_gs2gene
plot_gs_network	plot_gs_network
rank_gene_pert	rank_gene_pert
raw_gene_pert	raw_gene_pert
retrieve_topology	retrieve_topology
sSNAPPY	sSNAPPY
weight_ss_fc	weight_ss_fc
weight_ss_fc,data.frame-method	weight_ss_fc
weight_ss_fc,DGEList-method	weight_ss_fc
weight_ss_fc,matrix-method	weight_ss_fc
weight_ss_fc,SummarizedExperiment-method	weight_ss_fc
