Package: sSNAPPY
Title: Single Sample directioNAl Pathway Perturbation analYsis
Version: 1.4.1
Authors@R: c(
    person(
        "Wenjun", "Liu", , "wenjun.liu@adelaide.edu.au", role = c("aut", "cre"),
        comment = c(ORCID = "0000-0002-8185-3069")),
    person(
        "Stephen", "Pederson", email = "stephen.pederson.au@gmail.com", 
        role = "aut", comment = c(ORCID = "0000-0001-8197-3303")))
Description: A single sample pathway perturbation testing method for RNA-seq 
    data. The method propagates changes in gene expression down gene-set 
    topologies to compute single-sample directional pathway perturbation scores 
    that reflect potential direction of change. Perturbation scores can be 
    used to test significance of pathway perturbation at both individual-sample 
    and treatment levels.  
License: GPL-3
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
Suggests: BiocManager, BiocStyle, cowplot, DT, htmltools, knitr,
        pander, rmarkdown, spelling, testthat (>= 3.0.0), tidyverse
Config/testthat/edition: 3
SystemRequirements: C++11
LazyData: false
Imports: dplyr (>= 1.1), magrittr, rlang, stats, BiocParallel,
        graphite, Rcpp, tibble, ggraph, igraph, reshape2, org.Hs.eg.db,
        SummarizedExperiment, edgeR, methods, ggforce, pheatmap, utils,
        stringr
LinkingTo: Rcpp, RcppArmadillo
Depends: R (>= 4.2.0), ggplot2
biocViews: Software, GeneExpression, GeneSetEnrichment, GeneSignaling
URL: https://wenjun-liu.github.io/sSNAPPY/
VignetteBuilder: knitr
BugReports: https://github.com/Wenjun-Liu/sSNAPPY/issues
Language: en-US
git_url: https://git.bioconductor.org/packages/sSNAPPY
git_branch: RELEASE_3_17
git_last_commit: 28d521e
git_last_commit_date: 2023-05-01
Date/Publication: 2023-05-02
NeedsCompilation: yes
Packaged: 2023-05-02 22:37:53 UTC; biocbuild
Author: Wenjun Liu [aut, cre] (<https://orcid.org/0000-0002-8185-3069>),
  Stephen Pederson [aut] (<https://orcid.org/0000-0001-8197-3303>)
Maintainer: Wenjun Liu <wenjun.liu@adelaide.edu.au>
Built: R 4.3.1; x86_64-apple-darwin13.4.0; 2023-07-13 14:24:20 UTC; unix
