# sojourner: An R package for statistical analysis of single molecule trajectories

## Documentation for package ‘sojourner’ version 1.0.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

sojourner-package | sojourner - statistical analysis of single molecule trajectories
.boot.se.onecomp | bootstrap
.dwellTime | dwellTime
.exportRowWise | exportTrackll
.get.seRange | getCI
.linkSkippedFrames | linkSkippedFrames
.one.comp.fit.rt | Fitting Residence time (1-CDF)
.plotLocalizations.Density | plotLocalizations_Density
.plotTrack | plotTrack
.plotTrackOverlay.Dcoef | plotTrackOverlay_Dcoef
.singlecompFit | fitNormDistr
bootstrap | bootstrap
combineTrackll | combineTrackll
compareFolder | compareFolder
compare_RT_CDF | Compare Residence time/Survival Curve (1-CDF)
createTrackll | createTrackll
Dcoef | Dcoef
densityMaskTracks | densityMaskTracks
displacement.track | displacementCDF
displacementCDF | displacementCDF
dispVariance | dispVariance
dispVariance_track | dispVariance
dwellTime | dwellTime
exportTrackll | exportTrackll
filterOnCell | maskTracks
filterTrack | filterTrack
fitCDF | fitCDF
fitNormDistr | fitNormDistr
fitRT | Fitting Residence time (1-CDF)
getCI | getCI
hmmTrackll | hmmTrackll
indexCell | maskTracks
kernelDensity | densityMaskTracks
linkSkippedFrames | linkSkippedFrames
maskPoint | maskTracks
maskTracks | maskTracks
mergeTracks | mergeTracks
msd | msd
msd_perc | msd
msd_track | msd
msd_track_vecdt | msd
one.comp.fit | fitCDF
plotComponentTrackOverlay | plotTrack
plotIndividualTracks | plotIndividualTracks
plotLines | densityMaskTracks
plotLinesTrackl | densityMaskTracks
plotLocalizations_Density | plotLocalizations_Density
plotMask | plotTrack
plotNucTrackOverlay | plotTrack
plotNucTrackOverlayTrackl | plotTrack
plotPoints | densityMaskTracks
plotPointsTrackl | densityMaskTracks
plotTrack | plotTrack
plotTrackFromIndex | plotTrack
plotTrackOverlay | plotTrack
plotTrackOverlay_Dcoef | plotTrackOverlay_Dcoef
sampleTracks | maskTracks
selComponentTracks | selComponentTracks
sojourner | sojourner - statistical analysis of single molecule trajectories
sojournerGUI | sojournerGUI
squareDisp | squareDisp
squareDispCpp | squareDisp
trackLength | filterTrack
trimTrack | filterTrack