# This file created by conda-build 3.21.4
# meta.yaml template originally from:
# /Users/runner/work/bioconda-recipes/bioconda-recipes/recipes/bioconductor-sitepath, last modified Sat Mar 27 09:17:47 2021
# ------------------------------------------------

package:
  name: bioconductor-sitepath
  version: 1.6.3
source:
  md5: 17779a5ed5c104879814ffb8ec1b3099
  url:
    - https://bioarchive.galaxyproject.org/sitePath_1.6.3.tar.gz
    - https://bioconductor.org/packages/3.12/bioc/src/contrib/sitePath_1.6.3.tar.gz
    - https://depot.galaxyproject.org/software/bioconductor-sitepath/bioconductor-sitepath_1.6.3_src_all.tar.gz
build:
  number: '0'
  rpaths:
    - lib/
    - lib/R/lib/
  string: r40h832b226_0
requirements:
  build:
    - cctools_osx-64 949.0.1 h6407bdd_20
    - clang 11.1.0 h694c41f_0
    - clang-11 11.1.0 default_he082bbe_0
    - clang_osx-64 11.1.0 hb91bd55_0
    - clangxx 11.1.0 default_he082bbe_0
    - clangxx_osx-64 11.1.0 h7e1b574_0
    - compiler-rt 11.1.0 h654b07c_0
    - compiler-rt_osx-64 11.1.0 h8c5fa43_0
    - ld64_osx-64 530 he8994da_20
    - ldid 2.1.2 h7660a38_2
    - libclang-cpp11.1 11.1.0 default_he082bbe_0
    - libcxx 11.1.0 habf9029_0
    - libllvm11 11.1.0 hd011deb_0
    - llvm-tools 11.1.0 hd011deb_0
    - make 4.3 h22f3db7_1
    - tapi 1100.0.11 h9ce4665_0
    - zlib 1.2.11 h7795811_1010
  host:
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    - clang-11 11.1.0 default_he082bbe_0
    - clang_osx-64 11.1.0 hb91bd55_0
    - clangxx 11.1.0 default_he082bbe_0
    - clangxx_osx-64 11.1.0 h7e1b574_0
    - compiler-rt 11.1.0 h654b07c_0
    - compiler-rt_osx-64 11.1.0 h8c5fa43_0
    - curl 7.75.0 h06286d4_0
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    - gfortran_impl_osx-64 9.3.0 h9cc0e5e_20
    - gfortran_osx-64 9.3.0 h18f7dce_14
    - gmp 6.2.1 h2e338ed_0
    - graphite2 1.3.13 h2e338ed_1001
    - gsl 2.6 h71c5fe9_2
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    - krb5 1.17.2 h60d9502_0
    - ld64_osx-64 530 he8994da_20
    - ldid 2.1.2 h7660a38_2
    - libblas 3.8.0 11_h508aa58_netlib
    - libcblas 3.8.0 11_h508aa58_netlib
    - libclang-cpp11.1 11.1.0 default_he082bbe_0
    - libcurl 7.75.0 h8ef9fac_0
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    - libffi 3.3 h046ec9c_2
    - libgfortran 5.0.0 9_3_0_h6c81a4c_20
    - libgfortran-devel_osx-64 9.3.0 h6c81a4c_20
    - libgfortran5 9.3.0 h6c81a4c_20
    - libglib 2.68.0 hd556434_2
    - libiconv 1.16 haf1e3a3_0
    - liblapack 3.8.0 11_h508aa58_netlib
    - libllvm11 11.1.0 hd011deb_0
    - libnghttp2 1.43.0 h07e645a_0
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    - libssh2 1.9.0 h52ee1ee_6
    - libtiff 4.2.0 h355d032_0
    - libwebp-base 1.2.0 h0d85af4_2
    - libxml2 2.9.10 h802ca4f_3
    - llvm-openmp 11.1.0 hda6cdc1_0
    - llvm-tools 11.1.0 hd011deb_0
    - lz4-c 1.9.3 h046ec9c_0
    - make 4.3 h22f3db7_1
    - mpc 1.1.0 ha57cd0f_1009
    - mpfr 4.0.2 h72d8aaf_1
    - ncurses 6.2 h2e338ed_4
    - openssl 1.1.1k h0d85af4_0
    - pango 1.48.3 ha05cd14_0
    - pcre 8.44 hb1e8313_0
    - pcre2 10.36 h5cf9962_1
    - pixman 0.40.0 hbcb3906_0
    - r-ade4 1.7_16 r40h9c68fa3_1
    - r-ape 5.4_1 r40hdfb1349_0
    - r-aplot 0.0.6 r40h6115d3f_0
    - r-assertthat 0.2.1 r40h6115d3f_2
    - r-backports 1.2.1 r40h066c5db_0
    - r-base 4.0.3 hb6e1b8c_8
    - r-biocmanager 1.30.10 r40h6115d3f_1
    - r-brio 1.1.1 r40h066c5db_0
    - r-callr 3.5.1 r40h142f84f_0
    - r-cli 2.3.1 r40hc72bb7e_0
    - r-colorspace 2.0_0 r40h6b199c2_0
    - r-crayon 1.4.1 r40hc72bb7e_0
    - r-desc 1.3.0 r40hc72bb7e_0
    - r-diffobj 0.3.3 r40h066c5db_0
    - r-digest 0.6.27 r40h342fd00_0
    - r-dplyr 1.0.5 r40h9951f98_0
    - r-ellipsis 0.3.1 r40h17f1fa6_0
    - r-evaluate 0.14 r40h6115d3f_2
    - r-fansi 0.4.2 r40h066c5db_0
    - r-farver 2.1.0 r40h9951f98_0
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    - r-ggplot2 3.3.3 r40hc72bb7e_0
    - r-ggrepel 0.9.1 r40h815b84a_0
    - r-glue 1.4.2 r40h066c5db_0
    - r-gridextra 2.3 r40h6115d3f_1003
    - r-gtable 0.3.0 r40h6115d3f_3
    - r-hms 1.0.0 r40hc72bb7e_0
    - r-isoband 0.2.4 r40h9951f98_0
    - r-jsonlite 1.7.2 r40h066c5db_0
    - r-labeling 0.4.2 r40h142f84f_0
    - r-lattice 0.20_41 r40h066c5db_3
    - r-lazyeval 0.2.2 r40h17f1fa6_2
    - r-lifecycle 1.0.0 r40hc72bb7e_0
    - r-magrittr 2.0.1 r40h066c5db_1
    - r-mass 7.3_53.1 r40hf6ff476_0
    - r-matrix 1.3_2 r40h9a4b173_0
    - r-mgcv 1.8_34 r40h9a4b173_0
    - r-munsell 0.5.0 r40h6115d3f_1003
    - r-nlme 3.1_152 r40h59bb11e_0
    - r-patchwork 1.1.1 r40hc72bb7e_0
    - r-pillar 1.5.1 r40hc72bb7e_0
    - r-pixmap 0.4_12 r40hc72bb7e_0
    - r-pkgbuild 1.2.0 r40hc72bb7e_0
    - r-pkgconfig 2.0.3 r40h6115d3f_1
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    - r-praise 1.0.0 r40h6115d3f_1004
    - r-prettyunits 1.1.1 r40h6115d3f_1
    - r-processx 3.5.0 r40h28b5c78_0
    - r-progress 1.2.2 r40h6115d3f_2
    - r-ps 1.6.0 r40h28b5c78_0
    - r-purrr 0.3.4 r40h17f1fa6_1
    - r-r6 2.5.0 r40hc72bb7e_0
    - r-rcolorbrewer 1.1_2 r40h6115d3f_1003
    - r-rcpp 1.0.6 r40h815b84a_0
    - r-rematch2 2.1.2 r40h6115d3f_1
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    - r-rvcheck 0.1.8 r40h6115d3f_1
    - r-scales 1.1.1 r40h6115d3f_0
    - r-segmented 1.3_3 r40hc72bb7e_0
    - r-seqinr 4.2_5 r40h066c5db_0
    - r-sp 1.4_5 r40h066c5db_0
    - r-testthat 3.0.2 r40h4efb63e_0
    - r-tibble 3.1.0 r40h28b5c78_1
    - r-tidyr 1.1.3 r40h9951f98_0
    - r-tidyselect 1.1.0 r40h6115d3f_0
    - r-tidytree 0.3.3 r40h6115d3f_1
    - r-utf8 1.2.1 r40h28b5c78_0
    - r-vctrs 0.3.6 r40h066c5db_0
    - r-viridislite 0.3.0 r40h6115d3f_1003
    - r-waldo 0.2.5 r40hc72bb7e_0
    - r-withr 2.4.1 r40hc72bb7e_0
    - r-zeallot 0.1.0 r40h6115d3f_1002
    - readline 8.1 h05e3726_0
    - tapi 1100.0.11 h9ce4665_0
    - tk 8.6.10 h0419947_1
    - tktable 2.10 h49f0cf7_3
    - xz 5.2.5 haf1e3a3_1
    - zlib 1.2.11 h7795811_1010
    - zstd 1.4.9 h582d3a0_0
  run:
    - bioconductor-ggtree >=2.4.0,<2.5.0
    - libblas >=3.8.0,<4.0a0
    - libcxx >=11.1.0
    - liblapack >=3.8.0,<4.0a0
    - r-ape
    - r-aplot
    - r-base >=4.0,<4.1.0a0
    - r-ggplot2
    - r-ggrepel
    - r-gridextra
    - r-rcolorbrewer
    - r-rcpp
    - r-seqinr
    - r-tidytree
test:
  commands:
    - $R -e "library('sitePath')"
about:
  description: The package does hierarchical search for fixation mutations given multiple
    sequence alignment and phylogenetic tree. These fixation mutations can be specific
    to a phylogenetic lineages or shared by multiple lineages. The package also provides
    visualization of these mutations on the tree.
  home: https://bioconductor.org/packages/3.12/bioc/html/sitePath.html
  license: MIT + file LICENSE
  license_file: LICENSE
  summary: Detection of site fixation in molecular evolution
extra:
  copy_test_source_files: true
  final: true
