Package: sitePath
Type: Package
Title: Detection of site fixation in molecular evolution
Version: 1.6.0
Authors@R: c(person("Chengyang", "Ji",
                    email = "chengyang.ji12@alumni.xjtlu.edu.cn",
                    role = c("aut", "cre", "cph"),
                    comment = c(ORCID = "0000-0001-9258-5453")),
             person("Aiping", "Wu",
                    email = "wap@ism.cams.cn",
                    role = c("ths")))
Description: The package does hierarchical search for fixation mutations given
    multiple sequence alignment and phylogenetic tree. These fixation mutations
    can be specific to a phylogenetic lineages or shared by multiple lineages.
    The package also provides visualization of these mutations on the tree.
License: MIT + file LICENSE
Depends: R (>= 3.6.0)
Imports: methods, graphics, utils, stats, grDevices, ape, seqinr, Rcpp,
        gridExtra, RColorBrewer, ggplot2, ggrepel, aplot, tidytree,
        ggtree
Suggests: testthat, knitr, rmarkdown, BiocStyle
LinkingTo: Rcpp
RoxygenNote: 7.1.1
Encoding: UTF-8
VignetteBuilder: knitr
URL: https://wuaipinglab.github.io/sitePath/
BugReports: https://github.com/wuaipinglab/sitePath/issues
biocViews: Alignment, MultipleSequenceAlignment, Phylogenetics, SNP,
        Software
git_url: https://git.bioconductor.org/packages/sitePath
git_branch: RELEASE_3_12
git_last_commit: 4ffeb4c
git_last_commit_date: 2020-10-27
Date/Publication: 2020-10-27
NeedsCompilation: yes
Packaged: 2020-10-28 03:36:43 UTC; biocbuild
Author: Chengyang Ji [aut, cre, cph] (<https://orcid.org/0000-0001-9258-5453>),
  Aiping Wu [ths]
Maintainer: Chengyang Ji <chengyang.ji12@alumni.xjtlu.edu.cn>
Built: R 4.0.3; x86_64-apple-darwin13.4.0; 2020-10-29 13:16:57 UTC; unix
