signeR-package	signeR-package
Average_exp	methods
Average_exp,SignExp-method	methods
Average_sign	methods
Average_sign,SignExp-method	methods
BICboxplot	plots
cosmic_data	cosmic_data
DiffExp	Diffexp
DiffExp,SignExp,character-method	Diffexp
ExposureBarplot	plots
ExposureBarplot,SignExp-method	plots
ExposureBoxplot	plots
ExposureBoxplot,SignExp-method	plots
ExposureClassify	ExposureClassify
ExposureClassify,ANY,character-method	ExposureClassify
ExposureClassify,SignExp,character-method	ExposureClassify
ExposureClassifyCV	ExposureClassifyCV
ExposureClassifyCV,ANY,character-method	ExposureClassifyCV
ExposureClassifyCV,SignExp,character-method	ExposureClassifyCV
ExposureCorrelation	ExposureCorrelation
ExposureCorrelation,matrix,numeric-method	ExposureCorrelation
ExposureCorrelation,SignExp,numeric-method	ExposureCorrelation
ExposureGLM	ExposureGLM
ExposureGLM,matrix,numeric-method	ExposureGLM
ExposureGLM,SignExp,numeric-method	ExposureGLM
ExposureHeat	plots
ExposureHeat,SignExp-method	plots
ExposureSurvival	ExposureSurvival
ExposureSurvival,matrix,character-method	ExposureSurvival
ExposureSurvival,matrix,Surv-method	ExposureSurvival
ExposureSurvival,matrix-method	ExposureSurvival
ExposureSurvival,SignExp,character-method	ExposureSurvival
ExposureSurvival,SignExp,Surv-method	ExposureSurvival
ExposureSurvival,SignExp-method	ExposureSurvival
ExposureSurvModel	ExposureSurvModel
ExposureSurvModel,matrix,character-method	ExposureSurvModel
ExposureSurvModel,matrix,Surv-method	ExposureSurvModel
ExposureSurvModel,matrix-method	ExposureSurvModel
ExposureSurvModel,SignExp,character-method	ExposureSurvModel
ExposureSurvModel,SignExp,Surv-method	ExposureSurvModel
ExposureSurvModel,SignExp-method	ExposureSurvModel
FuzzyClustExp	ExposureFuzzyClustering
FuzzyClustExp,SignExp,numeric-method	ExposureFuzzyClustering
FuzzyClustExp,SignExp-method	ExposureFuzzyClustering
genCountMatrixFromVcf	genMatrix
genOpportunityFromGenome	genMatrix
HClustExp	ExposureHierarchicalClustering
HClustExp,SignExp,numeric-method	ExposureHierarchicalClustering
HClustExp,SignExp-method	ExposureHierarchicalClustering
Median_exp	methods
Median_exp,SignExp-method	methods
Median_sign	methods
Median_sign,SignExp-method	methods
Normalize	methods
Normalize,SignExp-method	methods
Paths	plots
Paths,SignExp-method	plots
Reorder_mutations	methods
Reorder_mutations,SignExp,numeric-method	methods
Reorder_samples	methods
Reorder_samples,SignExp,numeric-method	methods
Reorder_signatures	methods
Reorder_signatures,SignExp,numeric-method	methods
setMutations	methods
setMutations,SignExp-method	methods
setSamples	methods
setSamples,SignExp-method	methods
signeR	signeR
signeRFlow	signeRFlow
SignExp	signexp-class
SignExp-class	signexp-class
SignHeat	plots
SignHeat,SignExp-method	plots
SignPlot	plots
SignPlot,SignExp-method	plots
tcga_similarities	tcga_similarities
tcga_tumors	tcga_tumors
