# Empirical Bayesian approach to mutational signature discovery

## Documentation for package ‘signeR’ version 1.16.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

signeR-package | Empirical Bayesian approach to mutational signature discovery
Average_exp | SignExp class methods
Average_exp-method | SignExp class methods
Average_sign | SignExp class methods
Average_sign-method | SignExp class methods
BICboxplot | signeR plot functions
Classify | Classify unknown samples
Classify-method | Classify unknown samples
DiffExp | Differential Exposure Analysis
DiffExp-method | Differential Exposure Analysis
ExposureBarplot | signeR plot functions
ExposureBarplot-method | signeR plot functions
ExposureBoxplot | signeR plot functions
ExposureBoxplot-method | signeR plot functions
ExposureHeat | signeR plot functions
ExposureHeat-method | signeR plot functions
genCountMatrixFromVcf | count matrix and opportinity matrix generators
genOpportunityFromGenome | count matrix and opportinity matrix generators
Median_exp | SignExp class methods
Median_exp-method | SignExp class methods
Median_sign | SignExp class methods
Median_sign-method | SignExp class methods
Normalize | SignExp class methods
Normalize-method | SignExp class methods
Paths | signeR plot functions
Paths-method | signeR plot functions
Reorder_mutations | SignExp class methods
Reorder_mutations-method | SignExp class methods
Reorder_samples | SignExp class methods
Reorder_samples-method | SignExp class methods
Reorder_signatures | SignExp class methods
Reorder_signatures-method | SignExp class methods
setMutations | SignExp class methods
setMutations-method | SignExp class methods
setSamples | SignExp class methods
setSamples-method | SignExp class methods
signeR | signeR
SignExp | SignExp class
SignExp-class | SignExp class
SignHeat | signeR plot functions
SignHeat-method | signeR plot functions
SignPlot | signeR plot functions
SignPlot-method | signeR plot functions