Package: ShortRead
Type: Package
Title: FASTQ input and manipulation
Version: 1.42.0
Author: Martin Morgan, Michael Lawrence, Simon Anders
Maintainer: Bioconductor Package Maintainer
 <maintainer@bioconductor.org>
Description: This package implements sampling, iteration, and input of
        FASTQ files. The package includes functions for filtering and
        trimming reads, and for generating a quality assessment report.
        Data are represented as DNAStringSet-derived objects, and
        easily manipulated for a diversity of purposes.  The package
        also contains legacy support for early single-end, ungapped
        alignment formats.
License: Artistic-2.0
LazyLoad: yes
Depends: BiocGenerics (>= 0.23.3), BiocParallel, Biostrings (>=
        2.47.6), Rsamtools (>= 1.31.2), GenomicAlignments (>= 1.15.6)
Imports: Biobase, S4Vectors (>= 0.17.25), IRanges (>= 2.13.12),
        GenomeInfoDb (>= 1.15.2), GenomicRanges (>= 1.31.8), hwriter,
        methods, zlibbioc, lattice, latticeExtra,
Suggests: BiocStyle, RUnit, biomaRt, GenomicFeatures, yeastNagalakshmi
LinkingTo: S4Vectors, IRanges, XVector, Biostrings
biocViews: DataImport, Sequencing, QualityControl
git_url: https://git.bioconductor.org/packages/ShortRead
git_branch: RELEASE_3_9
git_last_commit: daa2576
git_last_commit_date: 2019-05-02
Date/Publication: 2019-05-02
NeedsCompilation: yes
Packaged: 2019-05-02 23:52:17 UTC; biocbuild
Built: R 3.6.1; x86_64-apple-darwin13.4.0; 2019-07-29 08:17:51 UTC; unix
