# This file created by conda-build 2.1.16
# meta.yaml template originally from:
# /Users/travis/build/bioconda/bioconda-recipes/recipes/bioconductor-shortread, last modified Fri Oct 20 17:50:18 2017
# ------------------------------------------------

package:
    name: bioconductor-shortread
    version: 1.34.2
source:
    fn: ShortRead_1.34.2.tar.gz
    sha256: fbf4066f9e4207a9c5f6c123105a1d3f238577892f8a6fb3af9abb4c07932a3d
    url:
        - http://bioconductor.org/packages/3.5/bioc/src/contrib/ShortRead_1.34.2.tar.gz
        - https://depot.galaxyproject.org/software/ShortRead/ShortRead_1.34.2_src_all.tar.gz
build:
    noarch: ''
    noarch_python: false
    number: '0'
    rpaths:
        - lib/R/lib/
        - lib/
    string: r3.4.1_0
requirements:
    build:
        - readline 6.2 0
        - libxml2 2.9.5 0
        - bioconductor-rsamtools 1.28.0 r3.4.1_0
        - r-matrixstats 0.52.2 r3.4.1_0
        - xz 5.2.3 0
        - wget 1.18 0
        - r-matrix 1.2_7.1 r3.4.1_0
        - bioconductor-summarizedexperiment 1.6.5 r3.4.1_0
        - curl 7.54.1 0
        - ca-certificates 2017.7.27.1 0
        - gsl 2.1 2
        - r-base 3.4.1 0
        - openssl 1.0.2l 0
        - bioconductor-biocgenerics 0.22.1 r3.4.1_0
        - bioconductor-biostrings 2.44.2 r3.4.1_0
        - zlib 1.2.8 3
        - libpng 1.6.28 1
        - graphite2 1.3.9 0
        - bioconductor-genomicranges 1.28.6 r3.4.1_0
        - krb5 1.14.2 0
        - r-rcurl 1.95_4.8 r3.4.1_0
        - r-lambda.r 1.1.9 r3.4.1_0
        - bioconductor-delayedarray 0.2.7 0
        - glib 2.51.4 0
        - r-futile.logger 1.4.3 r3.4.1_0
        - libgcc 4.8.5 1
        - bioconductor-biobase 2.36.2 r3.4.1_0
        - r-futile.options 1.0.0 r3.4.1_0
        - icu 58.1 1
        - libiconv 1.14 4
        - libffi 3.2.1 1
        - libtiff 4.0.7 0
        - r-bitops 1.0_6 r3.4.1_0
        - pango 1.40.4 0
        - bioconductor-iranges 2.10.5 r3.4.1_0
        - r-hwriter 1.3.2 r3.4.1_0
        - r-snow 0.4_2 r3.4.1_0
        - harfbuzz 1.4.3 0
        - bioconductor-genomeinfodbdata 0.99.0 1
        - jpeg 9b 1
        - pcre 8.39 0
        - pixman 0.34.0 0
        - bioconductor-zlibbioc 1.22.0 r3.4.1_0
        - gettext 0.19.8.1 0
        - libssh2 1.8.0 1
        - r-rcolorbrewer 1.1_2 r3.4.1_0
        - bioconductor-genomicalignments 1.12.2 r3.4.1_0
        - freetype 2.7 1
        - fontconfig 2.12.1 4
        - bioconductor-s4vectors 0.14.7 r3.4.1_0
        - cairo 1.14.6 4
        - r-latticeextra 0.6_28 r3.4.1_0
        - bioconductor-genomeinfodb 1.12.3 r3.4.1_0
        - r-lattice 0.20_34 r3.4.1_0
        - ncurses 5.9 10
        - bioconductor-biocparallel 1.10.1 r3.4.1_0
        - bioconductor-xvector 0.16.0 r3.4.1_0
        - tk 8.5.19 2
    run:
        - bioconductor-biobase
        - bioconductor-biocgenerics >=0.11.3
        - bioconductor-biocparallel
        - bioconductor-biostrings >=2.37.1
        - bioconductor-genomeinfodb >=1.1.19
        - bioconductor-genomicalignments >=1.5.4
        - bioconductor-genomicranges >=1.21.6
        - bioconductor-iranges >=2.3.7
        - bioconductor-rsamtools >=1.21.4
        - bioconductor-s4vectors >=0.13.8
        - bioconductor-zlibbioc
        - r-base
        - r-hwriter
        - r-lattice
        - r-latticeextra
        - zlib 1.2.8*
test:
    commands:
        - $R -e "library('ShortRead')"
about:
    home: http://bioconductor.org/packages/3.5/bioc/html/ShortRead.html
    license: Artistic-2.0
    summary: This package implements sampling, iteration, and input of FASTQ files.
        The package includes functions for filtering and trimming reads, and for generating
        a quality assessment report. Data are represented as DNAStringSet-derived
        objects, and easily manipulated for a diversity of purposes.  The package
        also contains legacy support for early single-end, ungapped alignment formats.
extra:
    final: true
