.logBH	logBH
bootstrapCluster	bootstrapCluster
buildKNNGraph	buildSNNGraph
buildKNNGraph,ANY-method	buildSNNGraph
buildKNNGraph,SingleCellExperiment-method	buildSNNGraph
buildSNNGraph	buildSNNGraph
buildSNNGraph,ANY-method	buildSNNGraph
buildSNNGraph,SingleCellExperiment-method	buildSNNGraph
buildSNNGraph,SummarizedExperiment-method	buildSNNGraph
calculateSumFactors	computeSumFactors
calculateSumFactors,ANY-method	computeSumFactors
calculateSumFactors,SummarizedExperiment-method	computeSumFactors
cleanSizeFactors	cleanSizeFactors
clusterKNNGraph	clusterSNNGraph
clusterKNNGraph,ANY-method	clusterSNNGraph
clusterKNNGraph,SingleCellExperiment-method	clusterSNNGraph
clusterKNNGraph,SummarizedExperiment-method	clusterSNNGraph
clusterModularity	clusterModularity
clusterPurity	clusterPurity
clusterPurity,ANY-method	clusterPurity
clusterPurity,SingleCellExperiment-method	clusterPurity
clusterPurity,SummarizedExperiment-method	clusterPurity
clusterSNNGraph	clusterSNNGraph
clusterSNNGraph,ANY-method	clusterSNNGraph
clusterSNNGraph,SingleCellExperiment-method	clusterSNNGraph
clusterSNNGraph,SummarizedExperiment-method	clusterSNNGraph
coassignProb	coassignProb
combineBlocks	combineBlocks
combineCV2	combineVar
combineMarkers	combineMarkers
combinePValues	combinePValues
combineVar	combineVar
computeSpikeFactors	computeSpikeFactors
computeSumFactors	computeSumFactors
connectClusterMST	createClusterMST
convertTo	convertTo
correlateGenes	correlateGenes
correlateNull	correlateNull
correlatePairs	correlatePairs
correlatePairs,ANY-method	correlatePairs
correlatePairs,SummarizedExperiment-method	correlatePairs
createClusterMST	createClusterMST
cyclone	cyclone
cyclone,ANY-method	cyclone
cyclone,SummarizedExperiment-method	cyclone
decideTestsPerLabel	decideTestsPerLabel
decomposeVar	defunct
defunct	defunct
denoisePCA	denoisePCA
denoisePCANumber	denoisePCA
DM	DM
doubletCells	doubletCells
doubletCells,ANY-method	doubletCells
doubletCells,SingleCellExperiment-method	doubletCells
doubletCells,SummarizedExperiment-method	doubletCells
doubletCluster	doubletCluster
doubletCluster,ANY-method	doubletCluster
doubletCluster,SingleCellExperiment-method	doubletCluster
doubletCluster,SummarizedExperiment-method	doubletCluster
doubletRecovery	doubletRecovery
doubletRecovery,ANY-method	doubletRecovery
doubletRecovery,SingleCellExperiment-method	doubletRecovery
doubletRecovery,SummarizedExperiment-method	doubletRecovery
findMarkers	findMarkers
findMarkers,ANY-method	findMarkers
findMarkers,SingleCellExperiment-method	findMarkers
findMarkers,SummarizedExperiment-method	findMarkers
fitTrendCV2	fitTrendCV2
fitTrendPoisson	fitTrendPoisson
fitTrendVar	fitTrendVar
getClusteredPCs	getClusteredPCs
getDenoisedPCs	denoisePCA
getDenoisedPCs,ANY-method	denoisePCA
getDenoisedPCs,SummarizedExperiment-method	denoisePCA
getMarkerEffects	getMarkerEffects
getTopHVGs	getTopHVGs
getTopMarkers	getTopMarkers
improvedCV2	defunct
makeTechTrend	defunct
modelGeneCV2	modelGeneCV2
modelGeneCV2,ANY-method	modelGeneCV2
modelGeneCV2,SingleCellExperiment-method	modelGeneCV2
modelGeneCV2,SummarizedExperiment-method	modelGeneCV2
modelGeneCV2WithSpikes	modelGeneCV2WithSpikes
modelGeneCV2WithSpikes,ANY-method	modelGeneCV2WithSpikes
modelGeneCV2WithSpikes,SingleCellExperiment-method	modelGeneCV2WithSpikes
modelGeneCV2WithSpikes,SummarizedExperiment-method	modelGeneCV2WithSpikes
modelGeneVar	modelGeneVar
modelGeneVar,ANY-method	modelGeneVar
modelGeneVar,SingleCellExperiment-method	modelGeneVar
modelGeneVar,SummarizedExperiment-method	modelGeneVar
modelGeneVarByPoisson	modelGeneVarByPoisson
modelGeneVarByPoisson,ANY-method	modelGeneVarByPoisson
modelGeneVarByPoisson,SingleCellExperiment-method	modelGeneVarByPoisson
modelGeneVarByPoisson,SummarizedExperiment-method	modelGeneVarByPoisson
modelGeneVarWithSpikes	modelGeneVarWithSpikes
modelGeneVarWithSpikes,ANY-method	modelGeneVarWithSpikes
modelGeneVarWithSpikes,SingleCellExperiment-method	modelGeneVarWithSpikes
modelGeneVarWithSpikes,SummarizedExperiment-method	modelGeneVarWithSpikes
multiBlockNorm	defunct
multiBlockVar	defunct
multiMarkerStats	multiMarkerStats
neighborsToKNNGraph	buildSNNGraph
neighborsToSNNGraph	buildSNNGraph
orderClusterMST	createClusterMST
overlapExprs	defunct
pairwiseBinom	pairwiseBinom
pairwiseBinom,ANY-method	pairwiseBinom
pairwiseBinom,SingleCellExperiment-method	pairwiseBinom
pairwiseBinom,SummarizedExperiment-method	pairwiseBinom
pairwiseTTests	pairwiseTTests
pairwiseTTests,ANY-method	pairwiseTTests
pairwiseTTests,SingleCellExperiment-method	pairwiseTTests
pairwiseTTests,SummarizedExperiment-method	pairwiseTTests
pairwiseWilcox	pairwiseWilcox
pairwiseWilcox,ANY-method	pairwiseWilcox
pairwiseWilcox,SingleCellExperiment-method	pairwiseWilcox
pairwiseWilcox,SummarizedExperiment-method	pairwiseWilcox
parallelPCA	defunct
pseudoBulkDGE	pseudoBulkDGE
pseudoBulkDGE,ANY-method	pseudoBulkDGE
pseudoBulkDGE,SummarizedExperiment-method	pseudoBulkDGE
pseudoBulkSpecific	pseudoBulkSpecific
pseudoBulkSpecific,ANY-method	pseudoBulkSpecific
pseudoBulkSpecific,SummarizedExperiment-method	pseudoBulkSpecific
quickCluster	quickCluster
quickCluster,ANY-method	quickCluster
quickCluster,SummarizedExperiment-method	quickCluster
quickPseudotime	quickPseudotime
quickSubCluster	quickSubCluster
quickSubCluster,ANY-method	quickSubCluster
quickSubCluster,SingleCellExperiment-method	quickSubCluster
quickSubCluster,SummarizedExperiment-method	quickSubCluster
sandbag	sandbag
sandbag,ANY-method	sandbag
sandbag,SummarizedExperiment-method	sandbag
scaledColRanks	scaledColRanks
scran-gene-selection	gene_selection
summarizeTestsPerLabel	decideTestsPerLabel
summaryMarkerStats	summaryMarkerStats
summaryMarkerStats,ANY-method	summaryMarkerStats
summaryMarkerStats,SummarizedExperiment-method	summaryMarkerStats
technicalCV2	defunct
testLinearModel	testLinearModel
testLinearModel,ANY-method	testLinearModel
testLinearModel,SummarizedExperiment-method	testLinearModel
testPseudotime	testPseudotime
testPseudotime,ANY-method	testPseudotime
testPseudotime,SummarizedExperiment-method	testPseudotime
testVar	defunct
trendVar	defunct
