# This file created by conda-build 3.21.4
# meta.yaml template originally from:
# /Users/runner/work/bioconda-recipes/bioconda-recipes/recipes/bioconductor-scpipe, last modified Fri Mar 26 14:37:38 2021
# ------------------------------------------------

package:
  name: bioconductor-scpipe
  version: 1.12.0
source:
  md5: c1c909da8ac4381a966cb545f110dbb1
  url:
    - https://bioarchive.galaxyproject.org/scPipe_1.12.0.tar.gz
    - https://bioconductor.org/packages/3.12/bioc/src/contrib/scPipe_1.12.0.tar.gz
    - https://depot.galaxyproject.org/software/bioconductor-scpipe/bioconductor-scpipe_1.12.0_src_all.tar.gz
build:
  number: '1'
  rpaths:
    - lib/
    - lib/R/lib/
  string: r40h832b226_1
requirements:
  build:
    - cctools_osx-64 949.0.1 h6407bdd_20
    - clang 11.1.0 h694c41f_0
    - clang-11 11.1.0 default_he082bbe_0
    - clang_osx-64 11.1.0 hb91bd55_0
    - clangxx 11.1.0 default_he082bbe_0
    - clangxx_osx-64 11.1.0 h7e1b574_0
    - compiler-rt 11.1.0 h654b07c_0
    - compiler-rt_osx-64 11.1.0 h8c5fa43_0
    - ld64_osx-64 530 he8994da_20
    - ldid 2.1.2 h7660a38_2
    - libclang-cpp11.1 11.1.0 default_he082bbe_0
    - libcxx 11.1.0 habf9029_0
    - libllvm11 11.1.0 hd011deb_0
    - llvm-tools 11.1.0 hd011deb_0
    - make 4.3 h22f3db7_1
    - tapi 1100.0.11 h9ce4665_0
    - zlib 1.2.11 h7795811_1010
  host:
    - _r-mutex 1.0.1 anacondar_1
    - bioconductor-annotationdbi 1.52.0 r40_0
    - bioconductor-beachmat 2.6.0 r40h64ad5ed_0
    - bioconductor-biobase 2.50.0 r40h68a2ddb_1
    - bioconductor-biocfilecache 1.14.0 r40_0
    - bioconductor-biocgenerics 0.36.0 r40_0
    - bioconductor-biocneighbors 1.8.0 r40h64ad5ed_0
    - bioconductor-biocparallel 1.24.0 r40h64ad5ed_0
    - bioconductor-biocsingular 1.6.0 r40h64ad5ed_0
    - bioconductor-biomart 2.46.0 r40_0
    - bioconductor-biostrings 2.58.0 r40h8909d69_0
    - bioconductor-delayedarray 0.16.0 r40h8909d69_0
    - bioconductor-delayedmatrixstats 1.12.0 r40_0
    - bioconductor-genomeinfodb 1.26.0 r40_0
    - bioconductor-genomeinfodbdata 1.2.4 r40_0
    - bioconductor-genomicalignments 1.26.0 r40h8909d69_0
    - bioconductor-genomicranges 1.42.0 r40h8909d69_0
    - bioconductor-hdf5array 1.18.0 r40h8909d69_0
    - bioconductor-iranges 2.24.0 r40h8909d69_0
    - bioconductor-matrixgenerics 1.2.0 r40_0
    - bioconductor-org.hs.eg.db 3.12.0 r40_0
    - bioconductor-org.mm.eg.db 3.12.0 r40_0
    - bioconductor-rhdf5 2.34.0 r40h64ad5ed_0
    - bioconductor-rhdf5filters 1.2.0 r40h64ad5ed_0
    - bioconductor-rhdf5lib 1.12.0 r40h8909d69_0
    - bioconductor-rhtslib 1.22.0 r40h8909d69_0
    - bioconductor-rsamtools 2.6.0 r40h64ad5ed_0
    - bioconductor-rtracklayer 1.50.0 r40h95a77da_1
    - bioconductor-s4vectors 0.28.0 r40h8909d69_0
    - bioconductor-scater 1.18.0 r40_0
    - bioconductor-scuttle 1.0.0 r40h64ad5ed_0
    - bioconductor-singlecellexperiment 1.12.0 r40_0
    - bioconductor-sparsematrixstats 1.2.0 r40h64ad5ed_0
    - bioconductor-summarizedexperiment 1.20.0 r40_0
    - bioconductor-xvector 0.30.0 r40h8909d69_0
    - bioconductor-zlibbioc 1.36.0 r40h8909d69_0
    - bwidget 1.9.14 h694c41f_0
    - bzip2 1.0.8 hc929b4f_4
    - c-ares 1.17.1 h0d85af4_1
    - ca-certificates 2020.12.5 h033912b_0
    - cairo 1.16.0 he43a7df_1008
    - cctools_osx-64 949.0.1 h6407bdd_20
    - clang 11.1.0 h694c41f_0
    - clang-11 11.1.0 default_he082bbe_0
    - clang_osx-64 11.1.0 hb91bd55_0
    - clangxx 11.1.0 default_he082bbe_0
    - clangxx_osx-64 11.1.0 h7e1b574_0
    - compiler-rt 11.1.0 h654b07c_0
    - compiler-rt_osx-64 11.1.0 h8c5fa43_0
    - curl 7.75.0 h06286d4_0
    - fontconfig 2.13.1 hd23ceaa_1004
    - freetype 2.10.4 h4cff582_1
    - fribidi 1.0.10 hbcb3906_0
    - gettext 0.19.8.1 h7937167_1005
    - gfortran_impl_osx-64 9.3.0 h9cc0e5e_20
    - gfortran_osx-64 9.3.0 h18f7dce_14
    - gmp 6.2.1 h2e338ed_0
    - graphite2 1.3.13 h2e338ed_1001
    - gsl 2.6 h71c5fe9_2
    - harfbuzz 2.8.0 h159f659_1
    - icu 68.1 h74dc148_0
    - isl 0.22.1 hb1e8313_2
    - jpeg 9d hbcb3906_0
    - krb5 1.17.2 h60d9502_0
    - ld64_osx-64 530 he8994da_20
    - ldid 2.1.2 h7660a38_2
    - libblas 3.8.0 11_h508aa58_netlib
    - libcblas 3.8.0 11_h508aa58_netlib
    - libclang-cpp11.1 11.1.0 default_he082bbe_0
    - libcurl 7.75.0 h8ef9fac_0
    - libcxx 11.1.0 habf9029_0
    - libedit 3.1.20191231 h0678c8f_2
    - libev 4.33 haf1e3a3_1
    - libffi 3.3 h046ec9c_2
    - libgfortran 5.0.0 9_3_0_h6c81a4c_20
    - libgfortran-devel_osx-64 9.3.0 h6c81a4c_20
    - libgfortran5 9.3.0 h6c81a4c_20
    - libglib 2.68.0 hd556434_2
    - libiconv 1.16 haf1e3a3_0
    - liblapack 3.8.0 11_h508aa58_netlib
    - libllvm11 11.1.0 hd011deb_0
    - libnghttp2 1.43.0 h07e645a_0
    - libpng 1.6.37 h7cec526_2
    - libssh2 1.9.0 h52ee1ee_6
    - libtiff 4.2.0 h355d032_0
    - libwebp-base 1.2.0 h0d85af4_2
    - libxml2 2.9.10 h802ca4f_3
    - llvm-openmp 11.1.0 hda6cdc1_0
    - llvm-tools 11.1.0 hd011deb_0
    - lz4-c 1.9.3 h046ec9c_0
    - make 4.3 h22f3db7_1
    - mpc 1.1.0 ha57cd0f_1009
    - mpfr 4.0.2 h72d8aaf_1
    - ncurses 6.2 h2e338ed_4
    - openssl 1.1.1k h0d85af4_0
    - pango 1.42.4 ha86e081_5
    - pcre 8.44 hb1e8313_0
    - pcre2 10.36 h5cf9962_1
    - pixman 0.40.0 hbcb3906_0
    - r-askpass 1.1 r40h17f1fa6_2
    - r-assertthat 0.2.1 r40h6115d3f_2
    - r-backports 1.2.1 r40h066c5db_0
    - r-base 4.0.3 h4b909e8_7
    - r-beeswarm 0.3.1 r40hc72bb7e_0
    - r-bh 1.75.0_0 r40hc72bb7e_0
    - r-bit 4.0.4 r40h800e0f2_0
    - r-bit64 4.0.5 r40h800e0f2_0
    - r-bitops 1.0_6 r40h17f1fa6_1004
    - r-blob 1.2.1 r40h6115d3f_1
    - r-brio 1.1.1 r40h066c5db_0
    - r-cachem 1.0.4 r40hf6ff476_0
    - r-callr 3.5.1 r40h142f84f_0
    - r-cli 2.3.1 r40hc72bb7e_0
    - r-colorspace 2.0_0 r40h6b199c2_0
    - r-crayon 1.4.1 r40hc72bb7e_0
    - r-curl 4.3 r40h17f1fa6_1
    - r-dbi 1.1.1 r40hc72bb7e_0
    - r-dbplyr 2.1.0 r40hc72bb7e_0
    - r-deoptimr 1.0_8 r40h6115d3f_1003
    - r-desc 1.3.0 r40hc72bb7e_0
    - r-diffobj 0.3.3 r40h066c5db_0
    - r-digest 0.6.27 r40h342fd00_0
    - r-dplyr 1.0.5 r40h9951f98_0
    - r-ellipsis 0.3.1 r40h17f1fa6_0
    - r-evaluate 0.14 r40h6115d3f_2
    - r-fansi 0.4.2 r40h066c5db_0
    - r-farver 2.1.0 r40h9951f98_0
    - r-fastmap 1.1.0 r40h815b84a_0
    - r-forcats 0.5.1 r40hc72bb7e_0
    - r-formatr 1.8 r40hc72bb7e_0
    - r-futile.logger 1.4.3 r40h6115d3f_1003
    - r-futile.options 1.0.1 r40h6115d3f_1002
    - r-generics 0.1.0 r40hc72bb7e_0
    - r-ggally 2.1.1 r40hc72bb7e_0
    - r-ggbeeswarm 0.6.0 r40_1003
    - r-ggplot2 3.3.3 r40hc72bb7e_0
    - r-glue 1.4.2 r40h066c5db_0
    - r-gridextra 2.3 r40h6115d3f_1003
    - r-gtable 0.3.0 r40h6115d3f_3
    - r-hash 3.0.1 r40h6115d3f_2
    - r-hms 1.0.0 r40hc72bb7e_0
    - r-httr 1.4.2 r40h6115d3f_0
    - r-irlba 2.3.3 r40h26f5615_3
    - r-isoband 0.2.4 r40h9951f98_0
    - r-jsonlite 1.7.2 r40h066c5db_0
    - r-labeling 0.4.2 r40h142f84f_0
    - r-lambda.r 1.2.4 r40h6115d3f_1
    - r-lattice 0.20_41 r40h066c5db_3
    - r-lifecycle 1.0.0 r40hc72bb7e_0
    - r-magrittr 2.0.1 r40h066c5db_1
    - r-mass 7.3_53.1 r40hf6ff476_0
    - r-matrix 1.3_2 r40h9a4b173_0
    - r-matrixstats 0.58.0 r40hf6ff476_0
    - r-mclust 5.4.7 r40h0a2d2ed_0
    - r-memoise 2.0.0 r40hc72bb7e_0
    - r-mgcv 1.8_34 r40h9a4b173_0
    - r-mime 0.10 r40hf6ff476_0
    - r-munsell 0.5.0 r40h6115d3f_1003
    - r-nlme 3.1_152 r40h59bb11e_0
    - r-openssl 1.4.3 r40ha713f70_0
    - r-pillar 1.5.1 r40hc72bb7e_0
    - r-pkgbuild 1.2.0 r40hc72bb7e_0
    - r-pkgconfig 2.0.3 r40h6115d3f_1
    - r-pkgload 1.2.0 r40h4efb63e_0
    - r-plogr 0.2.0 r40h6115d3f_1003
    - r-plyr 1.8.6 r40hc5da6b9_1
    - r-praise 1.0.0 r40h6115d3f_1004
    - r-prettyunits 1.1.1 r40h6115d3f_1
    - r-processx 3.5.0 r40h28b5c78_0
    - r-progress 1.2.2 r40h6115d3f_2
    - r-ps 1.6.0 r40h28b5c78_0
    - r-purrr 0.3.4 r40h17f1fa6_1
    - r-r6 2.5.0 r40hc72bb7e_0
    - r-rappdirs 0.3.3 r40hf6ff476_0
    - r-rcolorbrewer 1.1_2 r40h6115d3f_1003
    - r-rcpp 1.0.6 r40h815b84a_0
    - r-rcppannoy 0.0.18 r40h815b84a_0
    - r-rcpphnsw 0.3.0 r40h710217c_0
    - r-rcurl 1.98_1.3 r40h28b5c78_0
    - r-rematch2 2.1.2 r40h6115d3f_1
    - r-reshape 0.8.8 r40h17f1fa6_2
    - r-rlang 0.4.10 r40h066c5db_0
    - r-robustbase 0.93_7 r40h2704daa_0
    - r-rprojroot 2.0.2 r40hc72bb7e_0
    - r-rsqlite 2.2.4 r40h9951f98_0
    - r-rstudioapi 0.13 r40hc72bb7e_0
    - r-rsvd 1.0.3 r40h6115d3f_1
    - r-scales 1.1.1 r40h6115d3f_0
    - r-snow 0.4_3 r40h6115d3f_1002
    - r-stringi 1.5.3 r40h9aeca8d_1
    - r-stringr 1.4.0 r40h6115d3f_2
    - r-sys 3.4 r40h800e0f2_0
    - r-testthat 3.0.2 r40h4efb63e_0
    - r-tibble 3.1.0 r40h28b5c78_1
    - r-tidyr 1.1.3 r40h9951f98_0
    - r-tidyselect 1.1.0 r40h6115d3f_0
    - r-utf8 1.2.1 r40h28b5c78_0
    - r-vctrs 0.3.6 r40h066c5db_0
    - r-vipor 0.4.5 r40h6115d3f_1003
    - r-viridis 0.5.1 r40h6115d3f_1004
    - r-viridislite 0.3.0 r40h6115d3f_1003
    - r-waldo 0.2.5 r40hc72bb7e_0
    - r-withr 2.4.1 r40hc72bb7e_0
    - r-xml 3.99_0.6 r40h28b5c78_0
    - r-xml2 1.3.2 r40hc5da6b9_1
    - r-zeallot 0.1.0 r40h6115d3f_1002
    - readline 8.1 h05e3726_0
    - tapi 1100.0.11 h9ce4665_0
    - tk 8.6.10 h0419947_1
    - tktable 2.10 h49f0cf7_3
    - xz 5.2.5 haf1e3a3_1
    - zlib 1.2.11 h7795811_1010
    - zstd 1.4.9 h582d3a0_0
  run:
    - bioconductor-annotationdbi >=1.52.0,<1.53.0
    - bioconductor-biocgenerics >=0.36.0,<0.37.0
    - bioconductor-biomart >=2.46.0,<2.47.0
    - bioconductor-genomicranges >=1.42.0,<1.43.0
    - bioconductor-org.hs.eg.db >=3.12.0,<3.13.0
    - bioconductor-org.mm.eg.db >=3.12.0,<3.13.0
    - bioconductor-rhtslib >=1.22.0,<1.23.0
    - bioconductor-rtracklayer >=1.50.0,<1.51.0
    - bioconductor-s4vectors >=0.28.0,<0.29.0
    - bioconductor-scater >=1.18.0,<1.19.0
    - bioconductor-singlecellexperiment >=1.12.0,<1.13.0
    - bioconductor-summarizedexperiment >=1.20.0,<1.21.0
    - bioconductor-zlibbioc >=1.36.0,<1.37.0
    - libblas >=3.8.0,<4.0a0
    - libcxx >=11.1.0
    - liblapack >=3.8.0,<4.0a0
    - r-base >=4.0,<4.1.0a0
    - r-dplyr
    - r-ggally
    - r-ggplot2
    - r-glue >=1.3.0
    - r-hash
    - r-magrittr
    - r-mass
    - r-mclust
    - r-rcpp >=0.11.3
    - r-reshape
    - r-rlang
    - r-robustbase
    - r-scales
    - r-stringr
    - r-testthat
test:
  commands:
    - $R -e "library('scPipe')"
about:
  description: A preprocessing pipeline for single cell RNA-seq data that starts from
    the fastq files and produces a gene count matrix with associated quality control
    information. It can process fastq data generated by CEL-seq, MARS-seq, Drop-seq,
    Chromium 10x and SMART-seq protocols.
  home: https://bioconductor.org/packages/3.12/bioc/html/scPipe.html
  license: GPL (>= 2)
  license_file: /Users/runner/bioconda/conda-bld/bioconductor-scpipe_1616774102780/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p/lib/R/share/licenses/GPL-3
  summary: pipeline for single cell RNA-seq data analysis
extra:
  copy_test_source_files: true
  final: true
