# Generated by roxygen2: do not edit by hand

export(getSankey)
export(indexCell)
export(indexCluster)
export(scmapCell)
export(scmapCell2Cluster)
export(scmapCluster)
export(selectFeatures)
export(setFeatures)
importFrom(BiocGenerics,counts)
importFrom(Rcpp,sourceCpp)
importFrom(S4Vectors,"metadata<-")
importFrom(S4Vectors,DataFrame)
importFrom(S4Vectors,metadata)
importFrom(SingleCellExperiment,"logcounts<-")
importFrom(SingleCellExperiment,logcounts)
importFrom(SummarizedExperiment,"colData<-")
importFrom(SummarizedExperiment,"rowData<-")
importFrom(SummarizedExperiment,assayNames)
importFrom(SummarizedExperiment,colData)
importFrom(SummarizedExperiment,rowData)
importFrom(dplyr,"%>%")
importFrom(dplyr,group_by)
importFrom(dplyr,summarise)
importFrom(e1071,svm)
importFrom(ggplot2,aes)
importFrom(ggplot2,geom_abline)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,labs)
importFrom(ggplot2,scale_colour_manual)
importFrom(ggplot2,theme_classic)
importFrom(googleVis,gvisSankey)
importFrom(matrixStats,colMaxs)
importFrom(matrixStats,rowMaxs)
importFrom(methods,is)
importFrom(proxy,simil)
importFrom(randomForest,randomForest)
importFrom(reshape2,dcast)
importFrom(reshape2,melt)
importFrom(stats,cor)
importFrom(stats,kmeans)
importFrom(stats,lm)
importFrom(stats,median)
importFrom(stats,predict)
importFrom(utils,head)
useDynLib(scmap)
