# This file created by conda-build 3.24.0
# meta.yaml template originally from:
# /Users/runner/work/bioconda-recipes/bioconda-recipes/recipes/bioconductor-scmap, last modified Tue Jul 11 15:11:22 2023
# ------------------------------------------------

package:
  name: bioconductor-scmap
  version: 1.22.3
source:
  md5: a58a3a176f62d952dcd685a9027459bf
  url:
    - https://bioarchive.galaxyproject.org/scmap_1.22.3.tar.gz
    - https://bioconductor.org/packages/3.17/bioc/src/contrib/Archive/scmap/scmap_1.22.3.tar.gz
    - https://bioconductor.org/packages/3.17/bioc/src/contrib/scmap_1.22.3.tar.gz
    - https://depot.galaxyproject.org/software/bioconductor-scmap/bioconductor-scmap_1.22.3_src_all.tar.gz
build:
  number: '0'
  rpaths:
    - lib/
    - lib/R/lib/
  string: r43hc0ef7c4_0
requirements:
  build:
    - ca-certificates 2023.5.7 h8857fd0_0
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    - tapi 1100.0.11 h9ce4665_0
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  host:
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    - bioconductor-genomeinfodbdata 1.2.10 r43hdfd78af_0
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    - python 3.11.4 h30d4d87_0_cpython
    - python_abi 3.11 3_cp311
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    - r-randomforest 4.7_1.1 r43hfe07776_2
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    - r-withr 2.5.0 r43hc72bb7e_2
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    - zstd 1.5.2 h829000d_7
  run:
    - bioconductor-biobase >=2.60.0,<2.61.0
    - bioconductor-biocgenerics >=0.46.0,<0.47.0
    - bioconductor-s4vectors >=0.38.0,<0.39.0
    - bioconductor-singlecellexperiment >=1.22.0,<1.23.0
    - bioconductor-summarizedexperiment >=1.30.0,<1.31.0
    - libblas >=3.9.0,<4.0a0
    - libcxx >=15.0.7
    - liblapack >=3.9.0,<4.0a0
    - r-base >=4.3,<4.4.0a0
    - r-dplyr
    - r-e1071
    - r-ggplot2
    - r-googlevis
    - r-matrixstats
    - r-proxy
    - r-randomforest
    - r-rcpp >=0.12.12
    - r-rcpparmadillo
    - r-reshape2
test:
  commands:
    - $R -e "library('scmap')"
about:
  description: Single-cell RNA-seq (scRNA-seq) is widely used to investigate the composition
    of complex tissues since the technology allows researchers to define cell-types
    using unsupervised clustering of the transcriptome. However, due to differences
    in experimental methods and computational analyses, it is often challenging to
    directly compare the cells identified in two different experiments. scmap is a
    method for projecting cells from a scRNA-seq experiment on to the cell-types or
    individual cells identified in a different experiment.
  home: https://bioconductor.org/packages/3.17/bioc/html/scmap.html
  license: GPL-3
  license_file: /opt/mambaforge/envs/bioconda/conda-bld/bioconductor-scmap_1689102719360/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/lib/R/share/licenses/GPL-3
  summary: A tool for unsupervised projection of single cell RNA-seq data
extra:
  copy_test_source_files: true
  final: true
