# RTCGAToolbox

## CHANGES IN VERSION 2.9.41

## Bug fixes and minor improvements

* Fixed bug where file rename was not working due to incorrect path location
in `getFirehoseData`

## CHANGES IN VERSION 2.9.40

### New features

* `getBroadSubtypes` and `getGISTICPeaks` now included in the package.
Thanks to @lgeistlinger!
* Updated import directives
* Added peaks data slot to the `FirehoseGISTIC` class
* Numerous improvements to internal helpers
* Added a `GISTIC` argument to `getFirehoseData`

## CHANGES IN VERSION 2.7.44

### New features

* `selectType` function replaces all previous data type extractor functions
* `getData` improved, removed `CN` argument
* Cleaner documentation for `biocExtract`

### Bug fixes and minor improvements

* Included helper functions for enabling full functionality of `biocExtract`
* Added appropriate import directives
* Re-organized documentation for readability

## CHANGES IN VERSION 2.7.21

### New features

* `biocExtract` function now available - convert data objects to Bioconductor
friendly data classes

## CHANGES IN VERSION 2.7.21

### New features

* New maintainer for package
* Updated API - see `FirehoseData` slots for changes
* New extractor functions for slots of `FirehoseData`
* Standardize argument names and slots
* Export functions in package
* Updated NAMESPACE

### Bug fixes and minor improvements

* Cleaner documentation
* Import directives appropriate
* Example dataset updated to new API
