Package: Rsamtools
Type: Package
Title: Binary alignment (BAM), FASTA, variant call (BCF), and tabix
        file import
Version: 1.26.1
Author: Martin Morgan, Herv\'e Pag\`es, Valerie Obenchain, Nathaniel Hayden
Maintainer: Bioconductor Package Maintainer
 <maintainer@bioconductor.org>
Description: This package provides an interface to the 'samtools',
        'bcftools', and 'tabix' utilities (see 'LICENCE') for
        manipulating SAM (Sequence Alignment / Map), FASTA, binary
        variant call (BCF) and compressed indexed tab-delimited
        (tabix) files.
URL: http://bioconductor.org/packages/release/bioc/html/Rsamtools.html
License: Artistic-2.0 | file LICENSE
LazyLoad: yes
Depends: methods, GenomeInfoDb (>= 1.1.3), GenomicRanges (>= 1.21.6),
        Biostrings (>= 2.37.1)
Imports: utils, BiocGenerics (>= 0.1.3), S4Vectors (>= 0.7.11), IRanges
        (>= 2.3.7), XVector (>= 0.9.1), zlibbioc, bitops, BiocParallel
Suggests: GenomicAlignments, ShortRead (>= 1.19.10), GenomicFeatures,
        TxDb.Dmelanogaster.UCSC.dm3.ensGene, KEGG.db,
        TxDb.Hsapiens.UCSC.hg18.knownGene, RNAseqData.HNRNPC.bam.chr14,
        BSgenome.Hsapiens.UCSC.hg19, pasillaBamSubset, RUnit, BiocStyle
LinkingTo: S4Vectors, IRanges, XVector, Biostrings
biocViews: DataImport, Sequencing, Coverage, Alignment, QualityControl
Video:
        https://www.youtube.com/watch?v=Rfon-DQYbWA&list=UUqaMSQd_h-2EDGsU6WDiX0Q
NeedsCompilation: yes
Packaged: 2016-10-21 22:37:51 UTC; biocbuild
Built: R 3.3.2; x86_64-apple-darwin14.5.0; 2017-06-06 12:30:09 UTC; unix
