# This file created by conda-build 3.24.0
# meta.yaml template originally from:
# /Users/runner/work/bioconda-recipes/bioconda-recipes/recipes/bioconductor-rhisat2, last modified Sat May 27 19:53:06 2023
# ------------------------------------------------

package:
  name: bioconductor-rhisat2
  version: 1.14.0
source:
  md5: be7b01b092f63b6edc3f7489faf7724d
  url:
    - https://bioarchive.galaxyproject.org/Rhisat2_1.14.0.tar.gz
    - https://bioconductor.org/packages/3.16/bioc/src/contrib/Archive/Rhisat2/Rhisat2_1.14.0.tar.gz
    - https://bioconductor.org/packages/3.16/bioc/src/contrib/Rhisat2_1.14.0.tar.gz
    - https://depot.galaxyproject.org/software/bioconductor-rhisat2/bioconductor-rhisat2_1.14.0_src_all.tar.gz
build:
  number: '1'
  rpaths:
    - lib/
    - lib/R/lib/
  string: r42hc0ef7c4_1
requirements:
  build:
    - ca-certificates 2023.5.7 h8857fd0_0
    - cctools_osx-64 973.0.1 h48a5a9d_13
    - clang 15.0.7 h694c41f_2
    - clang-15 15.0.7 default_hdb78580_2
    - clang_osx-64 15.0.7 h03d6864_3
    - clangxx 15.0.7 default_hdb78580_2
    - clangxx_osx-64 15.0.7 h2133e9c_3
    - compiler-rt 15.0.7 he1888fc_1
    - compiler-rt_osx-64 15.0.7 he1888fc_1
    - icu 72.1 h7336db1_0
    - ld64_osx-64 609 h8ce0179_13
    - libclang-cpp15 15.0.7 default_hdb78580_2
    - libcxx 16.0.4 hd57cbcb_0
    - libiconv 1.17 hac89ed1_0
    - libllvm15 15.0.7 he4b1e75_2
    - libxml2 2.11.4 hd95e348_0
    - libzlib 1.2.13 hfd90126_4
    - llvm-tools 15.0.7 he4b1e75_2
    - make 4.3 h22f3db7_1
    - openssl 3.1.0 h8a1eda9_3
    - sigtool 0.1.3 h88f4db0_0
    - tapi 1100.0.11 h9ce4665_0
    - xz 5.2.6 h775f41a_0
    - zstd 1.5.2 hbc0c0cd_6
  host:
    - _r-mutex 1.0.1 anacondar_1
    - argcomplete 3.0.8 pyhd8ed1ab_0
    - bioconductor-annotationdbi 1.60.0 r42hdfd78af_0
    - bioconductor-biobase 2.58.0 r42h4c50009_1
    - bioconductor-biocfilecache 2.6.0 r42hdfd78af_0
    - bioconductor-biocgenerics 0.44.0 r42hdfd78af_0
    - bioconductor-biocio 1.8.0 r42hdfd78af_0
    - bioconductor-biocparallel 1.32.5 r42hc0ef7c4_1
    - bioconductor-biomart 2.54.0 r42hdfd78af_0
    - bioconductor-biostrings 2.66.0 r42h3be46a4_0
    - bioconductor-data-packages 20230420 hdfd78af_0
    - bioconductor-delayedarray 0.24.0 r42h3be46a4_0
    - bioconductor-genomeinfodb 1.34.9 r42hdfd78af_0
    - bioconductor-genomeinfodbdata 1.2.9 r42hdfd78af_0
    - bioconductor-genomicalignments 1.34.0 r42h3be46a4_0
    - bioconductor-genomicfeatures 1.50.2 r42hdfd78af_0
    - bioconductor-genomicranges 1.50.0 r42h3be46a4_0
    - bioconductor-iranges 2.32.0 r42h3be46a4_0
    - bioconductor-keggrest 1.38.0 r42hdfd78af_0
    - bioconductor-matrixgenerics 1.10.0 r42hdfd78af_0
    - bioconductor-rhtslib 2.0.0 r42h4c50009_1
    - bioconductor-rsamtools 2.14.0 r42hb890f52_0
    - bioconductor-rtracklayer 1.58.0 r42h6e925bd_1
    - bioconductor-s4vectors 0.36.0 r42h4c50009_1
    - bioconductor-sgseq 1.32.0 r42hdfd78af_0
    - bioconductor-summarizedexperiment 1.28.0 r42hdfd78af_0
    - bioconductor-xvector 0.38.0 r42h3be46a4_0
    - bioconductor-zlibbioc 1.44.0 r42h4c50009_2
    - bwidget 1.9.14 h694c41f_1
    - bzip2 1.0.8 h0d85af4_4
    - c-ares 1.19.1 h0dc2134_0
    - ca-certificates 2023.5.7 h8857fd0_0
    - cairo 1.16.0 h904041c_1014
    - cctools_osx-64 973.0.1 h5676edf_13
    - clang 16.0.1 h49458c0_0
    - clang-16 16.0.1 default_hd25f202_0
    - clang_osx-64 16.0.1 hac0a0c4_1
    - clangxx 16.0.1 default_hd25f202_0
    - clangxx_osx-64 16.0.1 h950475c_1
    - compiler-rt 16.0.1 h613da45_0
    - compiler-rt_osx-64 16.0.1 h613da45_0
    - curl 7.87.0 haf73cf8_0
    - expat 2.5.0 hf0c8a7f_1
    - font-ttf-dejavu-sans-mono 2.37 hab24e00_0
    - font-ttf-inconsolata 3.000 h77eed37_0
    - font-ttf-source-code-pro 2.038 h77eed37_0
    - font-ttf-ubuntu 0.83 hab24e00_0
    - fontconfig 2.14.2 h5bb23bf_0
    - fonts-conda-ecosystem 1 0
    - fonts-conda-forge 1 0
    - freetype 2.12.1 h3f81eb7_1
    - fribidi 1.0.10 hbcb3906_0
    - gettext 0.21.1 h8a4c099_0
    - gfortran_impl_osx-64 11.3.0 h1f927f5_31
    - gfortran_osx-64 11.3.0 h18f7dce_1
    - glpk 5.0 h3cb5acd_0
    - gmp 6.2.1 h2e338ed_0
    - graphite2 1.3.13 h2e338ed_1001
    - gsl 2.7 h93259b0_0
    - harfbuzz 6.0.0 h08f8713_0
    - icu 70.1 h96cf925_0
    - isl 0.25 hb486fe8_0
    - jpeg 9e hb7f2c08_3
    - jq 1.6 hc929b4f_1000
    - krb5 1.20.1 h0165f36_0
    - ld64_osx-64 609 hbfe4790_13
    - lerc 4.0.0 hb486fe8_0
    - libblas 3.9.0 5_h0661a58_netlib
    - libcblas 3.9.0 5_h0661a58_netlib
    - libclang-cpp16 16.0.1 default_hd25f202_0
    - libcurl 7.87.0 haf73cf8_0
    - libcxx 16.0.4 hd57cbcb_0
    - libdeflate 1.17 hac1461d_0
    - libedit 3.1.20191231 h0678c8f_2
    - libev 4.33 haf1e3a3_1
    - libexpat 2.5.0 hf0c8a7f_1
    - libffi 3.4.2 h0d85af4_5
    - libgfortran 5.0.0 11_3_0_h97931a8_31
    - libgfortran-devel_osx-64 11.3.0 h824d247_31
    - libgfortran5 12.2.0 he409387_31
    - libglib 2.76.3 hc62aa5d_0
    - libiconv 1.17 hac89ed1_0
    - liblapack 3.9.0 5_h0661a58_netlib
    - libllvm16 16.0.1 h7001e86_0
    - libnghttp2 1.51.0 h0dd9d14_0
    - libpng 1.6.39 ha978bb4_0
    - libsqlite 3.42.0 h58db7d2_0
    - libssh2 1.10.0 h7535e13_3
    - libtiff 4.5.0 hee9004a_2
    - libwebp-base 1.3.0 hb7f2c08_0
    - libxml2 2.10.3 h201ad9d_4
    - libzlib 1.2.13 hfd90126_4
    - llvm-openmp 16.0.4 hff08bdf_0
    - llvm-tools 16.0.1 h7001e86_0
    - make 4.3 h22f3db7_1
    - mpc 1.3.1 h81bd1dd_0
    - mpfr 4.2.0 h4f9bd69_0
    - ncurses 6.3 h96cf925_1
    - oniguruma 6.9.8 hac89ed1_0
    - openssl 1.1.1t hfd90126_0
    - pango 1.50.14 hbd9bf65_0
    - pcre2 10.40 h1c4e4bc_0
    - pixman 0.40.0 hbcb3906_0
    - python 3.11.0 h4150a38_1_cpython
    - python_abi 3.11 3_cp311
    - pyyaml 6.0 py311h5547dcb_5
    - r-askpass 1.1 r42h815d134_3
    - r-assertthat 0.2.1 r42hc72bb7e_3
    - r-base 4.2.2 h841e2fe_3
    - r-bh 1.81.0_1 r42hc72bb7e_0
    - r-bit 4.0.5 r42h815d134_0
    - r-bit64 4.0.5 r42h815d134_1
    - r-bitops 1.0_7 r42h815d134_1
    - r-blob 1.2.4 r42hc72bb7e_0
    - r-cachem 1.0.8 r42h6dc245f_0
    - r-cli 3.6.1 r42h49197e3_0
    - r-codetools 0.2_19 r42hc72bb7e_0
    - r-cpp11 0.4.3 r42hc72bb7e_0
    - r-crayon 1.5.2 r42hc72bb7e_1
    - r-curl 4.3.3 r42h815d134_1
    - r-dbi 1.1.3 r42hc72bb7e_1
    - r-dbplyr 2.3.2 r42hc72bb7e_0
    - r-digest 0.6.31 r42h49197e3_0
    - r-dplyr 1.1.2 r42hac7d2d5_0
    - r-ellipsis 0.3.2 r42h815d134_1
    - r-fansi 1.0.4 r42h815d134_0
    - r-fastmap 1.1.1 r42h49197e3_0
    - r-filelock 1.0.2 r42h815d134_1003
    - r-formatr 1.14 r42hc72bb7e_0
    - r-futile.logger 1.4.3 r42hc72bb7e_1004
    - r-futile.options 1.0.1 r42hc72bb7e_1003
    - r-generics 0.1.3 r42hc72bb7e_1
    - r-glue 1.6.2 r42h815d134_1
    - r-hms 1.1.3 r42hc72bb7e_0
    - r-httr 1.4.6 r42hc72bb7e_0
    - r-igraph 1.4.2 r42hee4dd10_0
    - r-jsonlite 1.8.4 r42h815d134_0
    - r-lambda.r 1.2.4 r42hc72bb7e_2
    - r-lattice 0.21_8 r42h815d134_0
    - r-lifecycle 1.0.3 r42hc72bb7e_1
    - r-magrittr 2.0.3 r42h815d134_1
    - r-matrix 1.5_4.1 r42hc46c21c_0
    - r-matrixstats 0.63.0 r42h815d134_0
    - r-memoise 2.0.1 r42hc72bb7e_1
    - r-mime 0.12 r42h815d134_1
    - r-openssl 2.0.5 r42h13d56fc_0
    - r-pillar 1.9.0 r42hc72bb7e_0
    - r-pkgconfig 2.0.3 r42hc72bb7e_2
    - r-plogr 0.2.0 r42hc72bb7e_1004
    - r-png 0.1_8 r42hbf2103b_0
    - r-prettyunits 1.1.1 r42hc72bb7e_2
    - r-progress 1.2.2 r42hc72bb7e_3
    - r-purrr 1.0.1 r42h815d134_0
    - r-r6 2.5.1 r42hc72bb7e_1
    - r-rappdirs 0.3.3 r42h815d134_1
    - r-rcpp 1.0.10 r42h49197e3_0
    - r-rcurl 1.98_1.10 r42h815d134_0
    - r-restfulr 0.0.15 r42h9f1ad2d_1
    - r-rjson 0.2.21 r42h49197e3_2
    - r-rlang 1.1.1 r42hac7d2d5_0
    - r-rsqlite 2.3.1 r42h49197e3_0
    - r-runit 0.4.32 r42hc72bb7e_1003
    - r-snow 0.4_4 r42hc72bb7e_1
    - r-stringi 1.7.12 r42h7183e51_0
    - r-stringr 1.5.0 r42h785f33e_0
    - r-sys 3.4.2 r42h6dc245f_0
    - r-tibble 3.2.1 r42h815d134_1
    - r-tidyr 1.3.0 r42h49197e3_0
    - r-tidyselect 1.2.0 r42hbe3e9c8_0
    - r-utf8 1.2.3 r42h815d134_0
    - r-vctrs 0.6.2 r42hac7d2d5_0
    - r-withr 2.5.0 r42hc72bb7e_1
    - r-xml 3.99_0.14 r42h67ce8dc_0
    - r-xml2 1.3.3 r42h3576887_2
    - r-yaml 2.3.7 r42h815d134_0
    - readline 8.2 h9e318b2_1
    - setuptools 67.7.2 pyhd8ed1ab_0
    - sigtool 0.1.3 h57ddcff_0
    - tapi 1100.0.11 h9ce4665_0
    - tk 8.6.12 h5dbffcc_0
    - tktable 2.10 h49f0cf7_3
    - toml 0.10.2 pyhd8ed1ab_0
    - tomlkit 0.11.8 pyha770c72_0
    - tzdata 2023c h71feb2d_0
    - xmltodict 0.13.0 pyhd8ed1ab_0
    - xz 5.2.6 h775f41a_0
    - yaml 0.2.5 h0d85af4_2
    - yq 3.2.2 pyhd8ed1ab_0
    - zlib 1.2.13 hfd90126_4
    - zstd 1.5.2 hbc0c0cd_6
  run:
    - bioconductor-genomicfeatures >=1.50.0,<1.51.0
    - bioconductor-genomicranges >=1.50.0,<1.51.0
    - bioconductor-sgseq >=1.32.0,<1.33.0
    - libblas >=3.9.0,<4.0a0
    - libcxx >=15.0.7
    - liblapack >=3.9.0,<4.0a0
    - r-base >=4.2,<4.3.0a0
test:
  commands:
    - $R -e "library('Rhisat2')"
about:
  description: An R interface to the HISAT2 spliced short-read aligner by Kim et al.
    (2015). The package contains wrapper functions to create a genome index and to
    perform the read alignment to the generated index.
  home: https://bioconductor.org/packages/3.16/bioc/html/Rhisat2.html
  license: GPL-3
  license_file: /opt/mambaforge/envs/bioconda/conda-bld/bioconductor-rhisat2_1685233446966/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/lib/R/share/licenses/GPL-3
  summary: R Wrapper for HISAT2 Aligner
extra:
  copy_test_source_files: true
  final: true
