Package: QuasR
Type: Package
Title: Quantify and Annotate Short Reads in R
Version: 1.22.1
Date: 2018-11-30
Author: Anita Lerch, Dimos Gaiditzis and Michael Stadler
Maintainer: Michael Stadler <michael.stadler@fmi.ch>
Depends: parallel, GenomicRanges (>= 1.13.3), Rbowtie
Imports: methods, grDevices, graphics, utils, zlibbioc, BiocGenerics,
        S4Vectors (>= 0.9.25), IRanges, BiocManager, Biobase,
        Biostrings, BSgenome, Rsamtools (>= 1.19.38), GenomicFeatures
        (>= 1.17.13), ShortRead (>= 1.19.1), GenomicAlignments,
        BiocParallel, GenomeInfoDb, rtracklayer, GenomicFiles
Suggests: Gviz, RUnit, BiocStyle, knitr, rmarkdown
LinkingTo: Rsamtools
Description: This package provides a framework for the quantification
        and analysis of Short Reads. It covers a complete workflow
        starting from raw sequence reads, over creation of alignments
        and quality control plots, to the quantification of genomic
        regions of interest.
License: GPL-2
biocViews: Genetics, Preprocessing, Sequencing, ChIPSeq, RNASeq,
        MethylSeq, Coverage, Alignment, QualityControl, ImmunoOncology
Archs: x64
VignetteBuilder: knitr
git_url: https://git.bioconductor.org/packages/QuasR
git_branch: RELEASE_3_8
git_last_commit: cd9cf74
git_last_commit_date: 2018-11-30
Date/Publication: 2018-12-01
NeedsCompilation: yes
Packaged: 2018-12-02 00:59:43 UTC; biocbuild
Built: R 3.5.1; x86_64-apple-darwin13.4.0; 2018-12-12 13:50:02 UTC; unix
