EcoliOxygen             Preprocessed microarray oxygen deprivation data
                        and filtered RegulonDB data
eQTLcross-class         eQTL experimental cross model class
eQTLnetwork-class       eQTL network model class
eQTLnetworkEstimate     Estimation of a eQTL network from genetical
                        genomics data
eQTLnetworkEstimationParam-class
                        eQTL network parameter model class
filterCollinearities    Filter collinearities
graphParam-class        Graph parameter classes
HMgmm-class             Homogeneous mixed graphical Markov model
qpAllCItests            Tests of conditional independence
qpAnyGraph              A graph
qpAvgNrr                Average non-rejection rate estimation
qpBoundary              Maximum boundary size of the resulting
                        qp-graphs
qpCItest                Conditional independence test
qpClique                Complexity of the resulting qp-graphs
qpCliqueNumber          Clique number
qpCov                   Calculation of the sample covariance matrix
qpEdgeNrr               Non-rejection rate estimation for a pair of
                        variables
qpFunctionalCoherence   Functional coherence estimation
qpG2Sigma               Random covariance matrix
qpGenNrr                Generalized non-rejection rate estimation
qpGetCliques            Clique list
qpGraph-class           The qp-graph
qpgraph-package         Estimation of genetic and molecular regulatory
                        networks from high-throughput genomics data
qpGraphDensity          Densities of resulting qp-graphs
qpHist                  Histograms of non-rejection rates
qpHTF                   Hastie Tibshirani Friedman iterative regression
                        algorithm
qpImportNrr             Import non-rejection rates
qpIPF                   Iterative proportional fitting algorithm
qpK2ParCor              Partial correlation coefficients
qpNrr                   Non-rejection rate estimation
qpPAC                   Estimation of partial correlation coefficients
qpPathWeight            Calculation of path weights
qpPCC                   Estimation of Pearson correlation coefficients
qpPlotMap               Plots a map of associated pairs
qpPlotNetwork           Plots a graph
qpPrecisionRecall       Calculation of precision-recall curves
qpPRscoreThreshold      Calculation of scores thresholds attaining
                        nominal precision or recall levels
qpRndGraph              Undirected random d-regular graphs
qpRndWishart            Random Wishart distribution
qpTopPairs              Report pairs of variables
qpUnifRndAssociation    Uniformly random association values
qpUpdateCliquesRemoving
                        Update clique list when removing one edge
SsdMatrix-class         Sum of squares and deviations Matrices
UGgmm-class             Undirected Gaussian graphical Markov model
