EcoliOxygen             Preprocessed microarray oxygen deprivation data
                        and filtered RegulonDB data
HMgmm-class             Homogeneous mixed graphical Markov model
SsdMatrix-class         Sum of squares and deviations Matrices
UGgmm-class             Undirected Gaussian graphical Markov model
eQTLcross-class         eQTL experimental cross model class
eQTLnetwork-class       eQTL network model class
eQTLnetworkEstimate     Estimation of a eQTL network from genetical
                        genomics data
eQTLnetworkEstimationParam-class
                        eQTL network parameter model class
graphParam-class        Graph parameter classes
qpAllCItests            Tests of conditional independence
qpAnyGraph              A graph
qpAvgNrr                Average non-rejection rate estimation
qpBoundary              Maximum boundary size of the resulting
                        qp-graphs
qpCItest                Conditional independence test
qpClique                Complexity of the resulting qp-graphs
qpCliqueNumber          Clique number
qpCov                   Calculation of the sample covariance matrix
qpEdgeNrr               Non-rejection rate estimation for a pair of
                        variables
qpFunctionalCoherence   Functional coherence estimation
qpG2Sigma               Random covariance matrix
qpGenNrr                Generalized non-rejection rate estimation
qpGetCliques            Clique list
qpGraph-class           The qp-graph
qpGraphDensity          Densities of resulting qp-graphs
qpHTF                   Hastie Tibshirani Friedman iterative regression
                        algorithm
qpHist                  Histograms of non-rejection rates
qpIPF                   Iterative proportional fitting algorithm
qpImportNrr             Import non-rejection rates
qpK2ParCor              Partial correlation coefficients
qpNrr                   Non-rejection rate estimation
qpPAC                   Estimation of partial correlation coefficients
qpPCC                   Estimation of Pearson correlation coefficients
qpPRscoreThreshold      Calculation of scores thresholds attaining
                        nominal precision or recall levels
qpPathWeight            Calculation of path weights
qpPlotMap               Plots a map of associated pairs
qpPlotNetwork           Plots a graph
qpPrecisionRecall       Calculation of precision-recall curves
qpRndGraph              Undirected random d-regular graphs
qpRndWishart            Random Wishart distribution
qpTopPairs              Report pairs of variables
qpUnifRndAssociation    Uniformly random association values
qpUpdateCliquesRemoving
                        Update clique list when removing one edge
qpgraph-package         Estimation of genetic and molecular regulatory
                        networks from high-throughput genomics data
