proFIA-package	proFIA-package
acquisitionDirectory	acquisitionDirectory
analyzeAcquisitionFIA	analyzeAcquisitionFIA
dataMatrix	proFIAset-class
dataMatrix,proFIAset-method	proFIAset-class
determiningInjectionZone	determiningInjectionZone
determiningSizePeak	determiningSizePeak.Geom
determiningSizePeak.Geom	determiningSizePeak.Geom
estimateNoiseMS	estimateNoiseMS
exportDataMatrix	exportDataMatrix-proFIAset-method
exportDataMatrix,proFIAset-method	exportDataMatrix-proFIAset-method
exportExpressionSet	exportExpressionSet-proFIAset-method
exportExpressionSet,proFIAset-method	exportExpressionSet-proFIAset-method
exportPeakTable	exportPeakTable-proFIAset-method
exportPeakTable,proFIAset-method	exportPeakTable-proFIAset-method
exportSampleMetadata	exportSampleMetadata-proFIAset-method
exportSampleMetadata,proFIAset-method	exportSampleMetadata-proFIAset-method
exportVariableMetadata	exportVariableMetadata-proFIAset-method
exportVariableMetadata,proFIAset-method	exportVariableMetadata-proFIAset-method
findBandsFIA	findBandsFIA
findFIASignal	findFIASignal
findMzGroup	findMzGroup-proFIAset-method
findMzGroup,proFIAset-method	findMzGroup-proFIAset-method
findPeaks	findFIASignal
getInjectionPeak	getInjectionPeak
group.FIA	group.FIA-proFIAset-method
group.FIA,proFIAset-method	group.FIA-proFIAset-method
groupMatrix	proFIAset-class
groupMatrix,proFIAset-method	proFIAset-class
impute.FIA	impute.FIA-proFIAset-method
impute.FIA,proFIAset-method	impute.FIA-proFIAset-method
impute.KNN_TN	impute.KNN_TN-proFIAset-method
impute.KNN_TN,proFIAset-method	impute.KNN_TN-proFIAset-method
impute.randomForest	impute.randomForest-proFIAset-method
impute.randomForest,proFIAset-method	impute.randomForest-proFIAset-method
injectionPeaks	proFIAset-class
injectionPeaks,proFIAset-method	proFIAset-class
makeDataMatrix	makeDataMatrix-proFIAset-method
makeDataMatrix,proFIAset-method	makeDataMatrix-proFIAset-method
noiseEstimation-class	noiseEstimation-class
peaks	proFIAset-class
peaks,proFIAset-method	proFIAset-class
peaksGroup	peaksGroup-proFIAset-method
peaksGroup,proFIAset-method	peaksGroup-proFIAset-method
phenoClasses	proFIAset-class
phenoClasses,proFIAset-method	proFIAset-class
plot,proFIAset,ANY,ANY-method	plot
plot,proFIAset,ANY-method	plot
plot,proFIAset-method	plot
plot.FIA	plot
plotFlowgrams	plotFlowgrams-proFIAset-method
plotFlowgrams,proFIAset-method	plotFlowgrams-proFIAset-method
plotNoise	plotNoise
plotRaw	plotRaw-proFIAset-method
plotRaw,proFIAset-method	plotRaw-proFIAset-method
plotSamplePeaks	plotSamplePeaks-proFIAset-method
plotSamplePeaks,proFIAset-method	plotSamplePeaks-proFIAset-method
proFIA	proFIA-package
proFIAset	proFIAset
proFIAset-class	proFIAset-class
