Package: pqsfinder
Type: Package
Title: Identification of potential quadruplex forming sequences
Version: 1.6.3
Date: 2017-04-12
Authors@R: c(person("Jiri", "Hon", role = c("aut", "cre"), email =
        "jiri.hon@gmail.com"), person("Tomas", "Martinek", role =
        "aut", email = "martinto@fit.vutbr.cz"), person("Matej",
        "Lexa", role = "aut", email = "lexa@fi.muni.cz"))
Author: Jiri Hon, Matej Lexa and Tomas Martinek
Maintainer: Jiri Hon <jiri.hon@gmail.com>
Description: The main functionality of this package is to detect
        DNA sequence patterns that are likely to fold into an
        intramolecular G-quadruplex (G4). Unlike many other approaches,
        this package is able to detect sequences responsible for G4s
        folded from imperfect G-runs containing bulges or mismatches
        and as such is more sensitive than competing algorithms.
License: BSD_2_clause + file LICENSE
biocViews: MotifDiscovery, SequenceMatching, GeneRegulation
LazyData: TRUE
Depends: Biostrings
Imports: Rcpp (>= 0.12.3), GenomicRanges, IRanges, S4Vectors, methods
Suggests: BiocStyle, knitr, Gviz, rtracklayer, ggplot2,
        BSgenome.Hsapiens.UCSC.hg38, testthat
LinkingTo: Rcpp, BH (>= 1.62.0)
SystemRequirements: GNU make, C++11
VignetteBuilder: knitr
RoxygenNote: 6.0.1
NeedsCompilation: yes
Packaged: 2017-12-01 04:11:19 UTC; biocbuild
Built: R 3.4.1; x86_64-apple-darwin14.5.0; 2018-02-11 21:25:35 UTC; unix
