{% set version = "1.24.0" %}
{% set name = "podkat" %}
{% set bioc = "3.13" %}

package:
  name: 'bioconductor-{{ name|lower }}'
  version: '{{ version }}'
source:
  url:
    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
  md5: a95c503c337b2c1ade4c5bc15d424e12
build:
  number: 0
  rpaths:
    - lib/R/lib/
    - lib/
# Suggests: BSgenome.Hsapiens.UCSC.hg38.masked, TxDb.Hsapiens.UCSC.hg38.knownGene, BSgenome.Mmusculus.UCSC.mm10.masked, GWASTools (>= 1.13.24), VariantAnnotation, SummarizedExperiment, knitr
# SystemRequirements: GNU make
requirements:
  host:
    - 'bioconductor-biobase >=2.52.0,<2.53.0'
    - 'bioconductor-biocgenerics >=0.38.0,<0.39.0'
    - 'bioconductor-biostrings >=2.60.0,<2.61.0'
    - 'bioconductor-bsgenome >=1.60.0,<1.61.0'
    - 'bioconductor-genomeinfodb >=1.28.0,<1.29.0'
    - 'bioconductor-genomicranges >=1.44.0,<1.45.0'
    - 'bioconductor-iranges >=2.26.0,<2.27.0'
    - 'bioconductor-rhtslib >=1.24.0,<1.25.0'
    - 'bioconductor-rsamtools >=2.8.0,<2.9.0'
    - r-base
    - r-matrix
    - 'r-rcpp >=0.11.1'
    - libblas
    - liblapack
  run:
    - 'bioconductor-biobase >=2.52.0,<2.53.0'
    - 'bioconductor-biocgenerics >=0.38.0,<0.39.0'
    - 'bioconductor-biostrings >=2.60.0,<2.61.0'
    - 'bioconductor-bsgenome >=1.60.0,<1.61.0'
    - 'bioconductor-genomeinfodb >=1.28.0,<1.29.0'
    - 'bioconductor-genomicranges >=1.44.0,<1.45.0'
    - 'bioconductor-iranges >=2.26.0,<2.27.0'
    - 'bioconductor-rhtslib >=1.24.0,<1.25.0'
    - 'bioconductor-rsamtools >=2.8.0,<2.9.0'
    - r-base
    - r-matrix
    - 'r-rcpp >=0.11.1'
  build:
    - {{ compiler('c') }}
    - {{ compiler('cxx') }}
    - make
test:
  commands:
    - '$R -e "library(''{{ name }}'')"'
about:
  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
  license: 'GPL (>= 2)'
  summary: 'Position-Dependent Kernel Association Test'
  description: 'This package provides an association test that is capable of dealing with very rare and even private variants. This is accomplished by a kernel-based approach that takes the positions of the variants into account. The test can be used for pre-processed matrix data, but also directly for variant data stored in VCF files. Association testing can be performed whole-genome, whole-exome, or restricted to pre-defined regions of interest. The test is complemented by tools for analyzing and visualizing the results.'
  license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
extra:
  identifiers:
    - biotools:podkat
    - doi:10.1038/nmeth.3252
  parent_recipe:
    name: bioconductor-podkat
    path: recipes/bioconductor-podkat
    version: 1.12.0

