assocTest               Perform Association Test
AssocTestResult-class   Class 'AssocTestResult'
AssocTestResultRanges-class
                        Class 'AssocTestResultRanges'
computeKernel           Compute Kernel Matrix
filterResult-methods    Filter Association Test Results According to
                        p-Values or Variants' Contributions
GenotypeMatrix-class    Class 'GenotypeMatrix'
genotypeMatrix-methods
                        Constructors for Creating 'GenotypeMatrix'
                        Objects
hgA                     Artificial Human Chromosome for Testing
                        Purposes
nullModel               Create Null Model for Association Test
NullModel-class         Class 'NullModel'
p.adjust-methods        Adjust p-Value for Multiple Tests
partitionRegions-methods
                        Partition Genomic Regions
plot                    Plotting functions
podkat-package          PODKAT Package
print-methods           Print Association Test Results
qqplot                  Quantile-Quantile Plots
readGenotypeMatrix-methods
                        Read from VCF File
readRegionsFromBedFile
                        Read Genomic Regions from BED File
readSampleNamesFromVcfHeader
                        Read Sample Names from VCF File Header
readVariantInfo-methods
                        Read information about variants from VCF file
sort-methods            Sort Association Test Results
split-methods           Split 'GRanges' Object
unmasked-datasets       Unmasked Regions of Human Genomes
unmaskedRegions         Extract Unmasked Regions from 'MaskedBSgenome'
                        Object
VariantInfo-class       Class 'VariantInfo'
weightFuncs             Weighting Functions
weights                 Extract Contribution Weights of Variants
