podkat-package	podkat-package
assocTest	assocTest-methods
assocTest,character,NullModel-method	assocTest-methods
assocTest,GenotypeMatrix,NullModel-method	assocTest-methods
assocTest,matrix,NullModel-method	assocTest-methods
assocTest,TabixFile,NullModel-method	assocTest-methods
assocTest-methods	assocTest-methods
AssocTestResult	AssocTestResult-class
AssocTestResult-class	AssocTestResult-class
AssocTestResultRanges	AssocTestResultRanges-class
AssocTestResultRanges-class	AssocTestResultRanges-class
b36Unmasked	unmasked-datasets
b37Unmasked	unmasked-datasets
betaWeights	weightFuncs
c,AssocTestResultRanges-method	AssocTestResultRanges-class
class:AssocTestResult	AssocTestResult-class
class:AssocTestResultRanges	AssocTestResultRanges-class
class:GenotypeMatrix	GenotypeMatrix-class
class:NullModel	NullModel-class
class:VariantInfo	VariantInfo-class
coefficients,NullModel-method	NullModel-class
computeKernel	computeKernel
filterResult	filterResult-methods
filterResult,AssocTestResultRanges-method	filterResult-methods
filterResult,GRanges-method	filterResult-methods
filterResult,GRangesList-method	filterResult-methods
filterResult-methods	filterResult-methods
GenotypeMatrix	GenotypeMatrix-class
genotypeMatrix	genotypeMatrix-methods
genotypeMatrix,ANY,character,missing-method	genotypeMatrix-methods
genotypeMatrix,ANY,GRanges,missing-method	genotypeMatrix-methods
genotypeMatrix,ANY,missing,missing-method	genotypeMatrix-methods
genotypeMatrix,ANY,numeric,character-method	genotypeMatrix-methods
genotypeMatrix,eSet,character,character-method	genotypeMatrix-methods
genotypeMatrix,eSet,character,missing-method	genotypeMatrix-methods
genotypeMatrix,eSet,numeric,character-method	genotypeMatrix-methods
GenotypeMatrix-class	GenotypeMatrix-class
genotypeMatrix-methods	genotypeMatrix-methods
hg18Unmasked	unmasked-datasets
hg19Unmasked	unmasked-datasets
hg38Unmasked	unmasked-datasets
hgA	hgA
invSdWeights	weightFuncs
length,NullModel-method	NullModel-class
logisticWeights	weightFuncs
MAF	VariantInfo-class
MAF,GenotypeMatrix-method	GenotypeMatrix-class
MAF,VariantInfo-method	VariantInfo-class
method:genotypeMatrix	genotypeMatrix-methods
method:readGenotypeMatrix	readGenotypeMatrix-methods
method:readVariantInfo	readVariantInfo-methods
names,NullModel-method	NullModel-class
NullModel	NullModel-class
nullModel	nullModel-methods
nullModel,formula,data.frame-method	nullModel-methods
nullModel,formula,missing-method	nullModel-methods
nullModel,matrix,factor-method	nullModel-methods
nullModel,matrix,numeric-method	nullModel-methods
nullModel,missing,factor-method	nullModel-methods
nullModel,missing,numeric-method	nullModel-methods
NullModel-class	NullModel-class
nullModel-methods	nullModel-methods
p.adjust	p.adjust-methods
p.adjust,AssocTestResultRanges-method	p.adjust-methods
p.adjust-methods	p.adjust-methods
partitionRegions	partitionRegions-methods
partitionRegions,GRanges-method	partitionRegions-methods
partitionRegions,GRangesList-method	partitionRegions-methods
partitionRegions,MaskedBSgenome-method	partitionRegions-methods
partitionRegions-methods	partitionRegions-methods
plot	plot-methods
plot,AssocTestResultRanges,character-method	plot-methods
plot,AssocTestResultRanges,GRanges-method	plot-methods
plot,AssocTestResultRanges,missing-method	plot-methods
plot,GenotypeMatrix,factor-method	plot-methods
plot,GenotypeMatrix,missing-method	plot-methods
plot,GenotypeMatrix,numeric-method	plot-methods
plot,GRanges,character-method	plot-methods
plot-methods	plot-methods
podkat	podkat-package
print	print-methods
print,AssocTestResultRanges-method	print-methods
print-methods	print-methods
qqplot	qqplot-methods
qqplot,AssocTestResultRanges,AssocTestResultRanges-method	qqplot-methods
qqplot,AssocTestResultRanges,missing-method	qqplot-methods
qqplot-methods	qqplot-methods
readGenotypeMatrix	readGenotypeMatrix-methods
readGenotypeMatrix,character,GRanges-method	readGenotypeMatrix-methods
readGenotypeMatrix,character,missing-method	readGenotypeMatrix-methods
readGenotypeMatrix,TabixFile,GRanges-method	readGenotypeMatrix-methods
readGenotypeMatrix,TabixFile,missing-method	readGenotypeMatrix-methods
readGenotypeMatrix-methods	readGenotypeMatrix-methods
readRegionsFromBedFile	readRegionsFromBedFile
readSampleNamesFromVcfHeader	readSampleNamesFromVcfHeader
readVariantInfo	readVariantInfo-methods
readVariantInfo,character,GRanges-method	readVariantInfo-methods
readVariantInfo,character,missing-method	readVariantInfo-methods
readVariantInfo,TabixFile,GRanges-method	readVariantInfo-methods
readVariantInfo,TabixFile,missing-method	readVariantInfo-methods
readVariantInfo-methods	readVariantInfo-methods
residuals,NullModel-method	NullModel-class
show,AssocTestResult-method	AssocTestResult-class
show,AssocTestResultRanges-method	AssocTestResultRanges-class
show,GenotypeMatrix-method	GenotypeMatrix-class
show,NullModel-method	NullModel-class
show,VariantInfo-method	VariantInfo-class
sort	sort-methods
sort,AssocTestResultRanges-method	sort-methods
sort-methods	sort-methods
split	split-methods
split,GRanges,GRangesList-method	split-methods
split-methods	split-methods
summary,VariantInfo-method	VariantInfo-class
unmasked-datasets	unmasked-datasets
unmaskedRegions	unmaskedRegions
VariantInfo	VariantInfo-class
variantInfo	VariantInfo-class
variantInfo,GenotypeMatrix-method	GenotypeMatrix-class
variantInfo,GRanges-method	VariantInfo-class
variantInfo,missing-method	VariantInfo-class
VariantInfo-class	VariantInfo-class
weightFuncs	weightFuncs
weights	weights-methods
weights,AssocTestResult-method	weights-methods
weights,AssocTestResultRanges-method	weights-methods
weights-methods	weights-methods
[,GenotypeMatrix,index,index,missing-method	GenotypeMatrix-class
[,GenotypeMatrix,index,missing,missing-method	GenotypeMatrix-class
[,GenotypeMatrix,missing,index,missing-method	GenotypeMatrix-class
[,NullModel,index,missing,missing-method	NullModel-class
