MolecularPermutationClassifier-class
                        Class 'MolecularPermutationClassifier' S4
                        implementation in R
PAM50-class             PAM50 S4 implementation in R
as                      'PAM50' high level coerce functions
classify,PAM50-method   'classify' subjects with PAM50 molecular
                        signature
filtrate                Virtual functions for
                        MolecularPermutationClassifier hierarchy
filtrate,PAM50-method   'filtrate' centroid genes from PAM50
                        classification
loadBCDataset           MolecularPermutationClassifier high level
                        constructor
pam50centroids          Example PAM50 objects for pbcmc package
parameters              Accessors for MolecularPermutationClassifier
                        child class slots
pbcmcPackage            Permutation-Based Confidence for Molecular
                        Classification (pbcmc)
permutate,PAM50-method
                        'permutate' subject gene-expression for PAM50
                        confidence
show                    'Show' a MolecularPermutationClassifier
                        subclass object
subjectReport,PAM50-method
                        PAM50 permutation test results reports
subtypes,PAM50-method   Subject 'subtypes' for PAM50 adaptation with
                        permuted results.
