# Generated by roxygen2: do not edit by hand

export(PAM50)
export(as)
export(summary)
exportClasses(MolecularPermutationClassifier)
exportClasses(PAM50)
exportMethods("annotation<-")
exportMethods("exprs<-")
exportMethods("parameters<-")
exportMethods("targets<-")
exportMethods(annotation)
exportMethods(as.PAM50)
exportMethods(classification)
exportMethods(classify)
exportMethods(databaseReport)
exportMethods(exprs)
exportMethods(filtrate)
exportMethods(loadBCDataset)
exportMethods(parameters)
exportMethods(permutate)
exportMethods(permutation)
exportMethods(subjectReport)
exportMethods(subtypes)
exportMethods(targets)
import(genefu)
import(parallel)
importClassesFrom(limma,MAList)
importClassesFrom(methods,ANY)
importClassesFrom(methods,classGeneratorFunction)
importClassesFrom(methods,data.frame)
importClassesFrom(methods,list)
importClassesFrom(methods,matrix)
importFrom(Biobase,"exprs<-")
importFrom(Biobase,exprs)
importFrom(BiocGenerics,"annotation<-")
importFrom(BiocGenerics,annotation)
importFrom(BiocParallel,"bpprogressbar<-")
importFrom(BiocParallel,bplapply)
importFrom(BiocParallel,bpparam)
importFrom(cowplot,plot_grid)
importFrom(ggplot2,aes)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_text)
importFrom(ggplot2,facet_wrap)
importFrom(ggplot2,geom_blank)
importFrom(ggplot2,geom_boxplot)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_text)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,scale_colour_discrete)
importFrom(ggplot2,scale_colour_manual)
importFrom(ggplot2,stat_smooth)
importFrom(ggplot2,theme)
importFrom(ggplot2,xlab)
importFrom(ggplot2,xlim)
importFrom(ggplot2,ylab)
importFrom(ggplot2,ylim)
importFrom(grDevices,dev.off)
importFrom(grDevices,pdf)
importFrom(grid,unit)
importFrom(grid,viewport)
importFrom(gridExtra,grid.arrange)
importFrom(gridExtra,tableGrob)
importFrom(limma,avereps)
importFrom(limma,show)
importFrom(methods,as)
importFrom(methods,new)
importFrom(methods,validObject)
importFrom(reshape2,melt)
importFrom(stats,median)
importFrom(stats,na.omit)
importFrom(stats,p.adjust)
importFrom(utils,capture.output)
importFrom(utils,data)
importFrom(utils,setTxtProgressBar)
importFrom(utils,txtProgressBar)
importMethodsFrom(Biobase,fData)
importMethodsFrom(Biobase,pData)
importMethodsFrom(BiocGenerics,"annotation<-")
importMethodsFrom(BiocGenerics,"colnames<-")
importMethodsFrom(BiocGenerics,"rownames<-")
importMethodsFrom(BiocGenerics,annotation)
importMethodsFrom(BiocGenerics,as.data.frame)
importMethodsFrom(BiocGenerics,cbind)
importMethodsFrom(BiocGenerics,colnames)
importMethodsFrom(BiocGenerics,do.call)
importMethodsFrom(BiocGenerics,eval)
importMethodsFrom(BiocGenerics,lapply)
importMethodsFrom(BiocGenerics,ncol)
importMethodsFrom(BiocGenerics,nrow)
importMethodsFrom(BiocGenerics,order)
importMethodsFrom(BiocGenerics,paste)
importMethodsFrom(BiocGenerics,rbind)
importMethodsFrom(BiocGenerics,rownames)
importMethodsFrom(BiocGenerics,sort)
importMethodsFrom(BiocGenerics,subset)
importMethodsFrom(BiocGenerics,table)
importMethodsFrom(BiocGenerics,unique)
importMethodsFrom(BiocGenerics,unlist)
importMethodsFrom(methods,coerce)
