{% set version = "2.2.0" %}
{% set name = "openCyto" %}
{% set bioc = "3.12" %}

package:
  name: 'bioconductor-{{ name|lower }}'
  version: '{{ version }}'
source:
  url:
    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
  md5: ea991d8f53811caae5a761cfd911a306
build:
  number: 1
  rpaths:
    - lib/R/lib/
    - lib/
# Suggests: flowWorkspaceData, knitr, testthat, utils, tools, parallel, ggcyto, CytoML
requirements:
  host:
    - 'bioconductor-biobase >=2.50.0,<2.51.0'
    - 'bioconductor-biocgenerics >=0.36.0,<0.37.0'
    - 'bioconductor-flowclust >=3.28.0,<3.29.0'
    - 'bioconductor-flowcore >=2.2.0,<2.3.0'
    - 'bioconductor-flowstats >=4.2.0,<4.3.0'
    - 'bioconductor-flowviz >=1.54.0,<1.55.0'
    - 'bioconductor-flowworkspace >=4.2.0,<4.3.0'
    - 'bioconductor-graph >=1.68.0,<1.69.0'
    - 'bioconductor-ncdfflow >=2.36.0,<2.37.0'
    - 'bioconductor-rbgl >=1.66.0,<1.67.0'
    - r-base
    - r-clue
    - r-data.table
    - r-gtools
    - r-ks
    - r-lattice
    - r-mass
    - r-plyr
    - r-r.utils
    - r-rcolorbrewer
    - r-rcpp
    - r-rrcov
    - libblas
    - liblapack
  run:
    - 'bioconductor-biobase >=2.50.0,<2.51.0'
    - 'bioconductor-biocgenerics >=0.36.0,<0.37.0'
    - 'bioconductor-flowclust >=3.28.0,<3.29.0'
    - 'bioconductor-flowcore >=2.2.0,<2.3.0'
    - 'bioconductor-flowstats >=4.2.0,<4.3.0'
    - 'bioconductor-flowviz >=1.54.0,<1.55.0'
    - 'bioconductor-flowworkspace >=4.2.0,<4.3.0'
    - 'bioconductor-graph >=1.68.0,<1.69.0'
    - 'bioconductor-ncdfflow >=2.36.0,<2.37.0'
    - 'bioconductor-rbgl >=1.66.0,<1.67.0'
    - r-base
    - r-clue
    - r-data.table
    - r-gtools
    - r-ks
    - r-lattice
    - r-mass
    - r-plyr
    - r-r.utils
    - r-rcolorbrewer
    - r-rcpp
    - r-rrcov
  build:
    - {{ compiler('c') }}
    - {{ compiler('cxx') }}
    - make
test:
  commands:
    - '$R -e "library(''{{ name }}'')"'
about:
  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
  license: Artistic-2.0
  summary: 'Hierarchical Gating Pipeline for flow cytometry data'
  description: 'This package is designed to facilitate the automated gating methods in sequential way to mimic the manual gating strategy.'
extra:
  parent_recipe:
    name: bioconductor-opencyto
    path: recipes/bioconductor-opencyto
    version: 1.20.0

