openCyto-package	openCyto
add,GatingHierarchy,ocRectangleGate-method	add
add,GatingHierarchy,ocRectRefGate-method	add
add_pop	add_pop
add_pop_init	add_pop_init
as.data.table.gatingTemplate	as.data.table.gatingTemplate
boolMethod-class	boolMethod-class
cytokine	gate_tail
delete.helperGates	toggle.helperGates
dims,gtMethod-method	dims-gtMethod-method
dummyMethod-class	dummyMethod-class
fcEllipsoidGate	fcEllipsoidGate
fcEllipsoidGate-class	fcEllipsoidGate-class
fcFilter-class	fcFilter-class
fcFilterList	fcFilterList
fcFilterList-class	fcFilterList-class
fcPolygonGate	fcPolygonGate
fcPolygonGate-class	fcPolygonGate-class
fcRectangleGate	fcRectangleGate
fcRectangleGate-class	fcRectangleGate-class
fcTree	fcTree
fcTree-class	fcTree-class
flowClust.1d	flowClust1d
flowClust.2d	flowClust2d
gate_flowClust_1d	flowClust1d
gate_flowClust_2d	flowClust2d
gate_mindensity	gate_mindensity
gate_mindensity2	gate_mindensity2
gate_quad_sequential	gate_quad_sequential
gate_quad_tmix	gate_quad_tmix
gate_quantile	gate_quantile
gate_tail	gate_tail
gating	gating-methods
gating,boolMethod,GatingSet-method	gating-methods
gating,boolMethod,GatingSetList-method	gating-methods
gating,dummyMethod,GatingSet-method	gating-methods
gating,dummyMethod,GatingSetList-method	gating-methods
gating,gatingTemplate,GatingSet-method	gating-methods
gating,gatingTemplate,GatingSetList-method	gating-methods
gating,gtMethod,GatingSet-method	gating-gtMethod-GatingSet-method
gating,gtMethod,GatingSetList-method	gating-gtMethod-GatingSet-method
gating,polyFunctions,GatingSet-method	gating-methods
gating,polyFunctions,GatingSetList-method	gating-methods
gating,refGate,GatingSet-method	gating-methods
gating,refGate,GatingSetList-method	gating-methods
gatingTemplate	gatingTemplate-class
gatingTemplate,character-method	gatingTemplate-class
gatingTemplate-class	gatingTemplate-class
get.helperGates	toggle.helperGates
getChildren,gatingTemplate,character-method	getChildren-gatingTemplate-character-method
getGate,fcTree,character-method	getGate-fcTree-character-method
getGate,gatingTemplate,character-method	getGate-gatingTemplate-character-method
getNodes,fcTree-method	getNodes-fcTree-method
getNodes,gatingTemplate-method	getNodes
getParent,gatingTemplate,character-method	getParent-gatingTemplate-character-method
groupBy,gtMethod-method	groupBy-gtMethod-method
gtMethod	gtMethod-class
gtMethod-class	gtMethod-class
gtPopulation-class	gtPopulation-class
gtSubsets-class	gtSubsets-class
isCollapse,gtMethod-method	isCollapse-gtMethod-method
listgtMethods	listgtMethods
mindensity	gate_mindensity
mindensity2	gate_mindensity2
names,gtMethod-method	names-gtMethod-method
names,gtPopulation-method	names-gtPopulation-method
ocRectangleGate-class	ocRectangleGate-class
ocRectRefGate	ocRectRefGate
ocRectRefGate-class	ocRectRefGate-class
openCyto	openCyto
openCyto.options	openCyto.options
parameters,gtMethod-method	parameters-gtMethod-method
plot,fcFilterList,ANY-method	plot-fcFilterList-ANY-method
plot,fcTree,character-method	plot-fcTree-character-method
plot,gatingTemplate,ANY-method	plot-gatingTemplate-missing-method
plot,gatingTemplate,character-method	plot-gatingTemplate-missing-method
plot,gatingTemplate,missing-method	plot-gatingTemplate-missing-method
plot,gatingTemplate-method	plot-gatingTemplate-missing-method
polyFunctions-class	polyFunctions-class
posteriors,fcFilter,ANY-method	posteriors-fcFilter-ANY-method
posteriors,fcFilter,character-method	posteriors-fcFilter-ANY-method
ppMethod	ppMethod-class
ppMethod,gatingTemplate,character-method	ppMethod-gatingTemplate-character-method
ppMethod-class	ppMethod-class
preprocessing,ppMethod,GatingSet-method	preprocessing-ppMethod-GatingSet-method
priors,fcFilter,ANY-method	priors-fcFilter-ANY-method
priors,fcFilter,character-method	priors-fcFilter-ANY-method
prior_flowClust	prior_flowClust
quadGate.seq	gate_quad_sequential
quadGate.tmix	gate_quad_tmix
quantileGate	gate_quantile
refGate-class	refGate-class
registerGatingFunction	registerPlugins
registerPlugins	registerPlugins
remove_pop	remove_pop
show,boolMethod-method	show-boolMethod-method
show,fcFilter-method	show-fcFilter-method
show,gatingTemplate-method	show-gatingTemplate-method
show,gtMethod-method	show-gtMethod-method
tailgate	gate_tail
tautString	tautString
tautStringGate	tautString
templateGen	templateGen
toggle.helperGates	toggle.helperGates
