Package: oligoClasses
Version: 1.42.0
Title: Classes for high-throughput arrays supported by oligo and crlmm
Author: Benilton Carvalho and Robert Scharpf
Maintainer: Benilton Carvalho <beniltoncarvalho@gmail.com> and Robert Scharpf <rscharpf@jhsph.edu>
Depends: R (>= 2.14)
Imports: BiocGenerics (>= 0.3.2), Biobase (>= 2.17.8), methods,
        graphics, IRanges (>= 2.5.17), GenomicRanges (>= 1.23.7),
        SummarizedExperiment, Biostrings (>= 2.23.6), affyio (>=
        1.23.2), ff, foreach, BiocInstaller, utils, S4Vectors (>=
        0.9.25), RSQLite, DBI
Enhances: doMC, doMPI, doSNOW, doParallel, doRedis
Suggests: hapmapsnp5, hapmapsnp6, pd.genomewidesnp.6,
        pd.genomewidesnp.5, pd.mapping50k.hind240,
        pd.mapping50k.xba240, pd.mapping250k.sty, pd.mapping250k.nsp,
        genomewidesnp6Crlmm (>= 1.0.7), genomewidesnp5Crlmm (>= 1.0.6),
        RUnit, human370v1cCrlmm, SNPchip, VanillaICE, crlmm
Description: This package contains class definitions, validity checks, and initialization methods for classes used by the oligo and crlmm packages.
License: GPL (>= 2)
LazyLoad: yes
Collate: AllClasses.R AllGenerics.R utils-general.R utils-lds.R
        utils-parallel.R methods-gSet.R initialize-methods.R
        methods-AlleleSet.R methods-AnnotatedDataFrame.R
        methods-FeatureSet.R methods-AssayData.R
        methods-SnpFeatureSet.R methods-oligoSnpSet.R
        methods-CopyNumberSet.R methods-CNSet.R methods-PDInfo.R
        methods-RangedDataCNV.R methods-SnpSet.R
        methods-GenomeAnnotatedDataFrame.R methods-BeadStudioSet.R
        methods-BeadStudioSetList.R methods-gSetList.R
        methods-GRanges.R methods-SummarizedExperiment.R show-methods.R
        functions.R zzz.R
biocViews: Infrastructure
## Local Variables:
## time-stamp-pattern: "8/Date: %3a %3b %2d %02H:%02M:%02S %Z %:y\n"
## End:
NeedsCompilation: no
Packaged: 2018-04-30 22:54:09 UTC; biocbuild
Built: R 3.5.1; ; 2018-10-25 11:18:31 UTC; unix
