{% set version = "1.58.0" %}
{% set name = "oligo" %}
{% set bioc = "3.14" %}

package:
  name: 'bioconductor-{{ name|lower }}'
  version: '{{ version }}'
source:
  url:
    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
  md5: 851a184174a24d36b1664fa2e9d50342
build:
  number: 1
  rpaths:
    - lib/R/lib/
    - lib/
# Suggests: BSgenome.Hsapiens.UCSC.hg18, hapmap100kxba, pd.hg.u95av2, pd.mapping50k.xba240, pd.huex.1.0.st.v2, pd.hg18.60mer.expr, pd.hugene.1.0.st.v1, maqcExpression4plex, genefilter, limma, RColorBrewer, oligoData, BiocStyle, knitr, RUnit, biomaRt, AnnotationDbi, ACME, RCurl
requirements:
  host:
    - 'bioconductor-affxparser >=1.66.0,<1.67.0'
    - 'bioconductor-affyio >=1.64.0,<1.65.0'
    - 'bioconductor-biobase >=2.54.0,<2.55.0'
    - 'bioconductor-biocgenerics >=0.40.0,<0.41.0'
    - 'bioconductor-biostrings >=2.62.0,<2.63.0'
    - 'bioconductor-oligoclasses >=1.56.0,<1.57.0'
    - 'bioconductor-preprocesscore >=1.56.0,<1.57.0'
    - 'bioconductor-zlibbioc >=1.40.0,<1.41.0'
    - r-base
    - 'r-dbi >=0.3.1'
    - r-ff
    - 'r-rsqlite >=1.0.0'
    - libblas
    - liblapack
  run:
    - 'bioconductor-affxparser >=1.66.0,<1.67.0'
    - 'bioconductor-affyio >=1.64.0,<1.65.0'
    - 'bioconductor-biobase >=2.54.0,<2.55.0'
    - 'bioconductor-biocgenerics >=0.40.0,<0.41.0'
    - 'bioconductor-biostrings >=2.62.0,<2.63.0'
    - 'bioconductor-oligoclasses >=1.56.0,<1.57.0'
    - 'bioconductor-preprocesscore >=1.56.0,<1.57.0'
    - 'bioconductor-zlibbioc >=1.40.0,<1.41.0'
    - r-base
    - 'r-dbi >=0.3.1'
    - r-ff
    - 'r-rsqlite >=1.0.0'
  build:
    - {{ compiler('c') }}
    - make
test:
  commands:
    - '$R -e "library(''{{ name }}'')"'
about:
  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
  license: 'LGPL (>= 2)'
  summary: 'Preprocessing tools for oligonucleotide arrays'
  description: 'A package to analyze oligonucleotide arrays (expression/SNP/tiling/exon) at probe-level. It currently supports Affymetrix (CEL files) and NimbleGen arrays (XYS files).'
  license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/LGPL-3'
extra:
  identifiers:
    - biotools:oligo
  parent_recipe:
    name: bioconductor-oligo
    path: recipes/bioconductor-oligo
    version: 1.44.0

