contabs                 Contingency tables for networks with
                        probabilistic edges.
contabs.netwBMA         Network assessment with incomplete context.
contabs.prelim          Preliminary calculation for network assessment.
dream4gold10            DREAM 4 (Stolovitsky et al. 2007) 'gold
                        standard' reference network specifications,
                        simulated time series perturbation subsets, and
                        steady state (wild-type) gene expression
                        levels.
fastBMAcontrol          Control parameters for 'networkBMA' when using
                        fastBMA algorithm
fastgControl            Control parameters for using Zellner's g-prior
                        in fastBMA algorithm in 'networkBMA'
gControl                Control parameters for using Zellner's g-prior
                        in 'ScanBMA'
iBMAcontrolLM           Control parameters for 'iterateBMAlm'
iterateBMAlm            Iterative BMA for linear modeling with prior
                        variable probabilities.
networkBMA              Gene network inference from time series data
                        via BMA.
roc                     Receiver Operating Characteristic and
                        Precision-Recall Curves
ScanBMA                 Bayesian Model Averaging for linear regression
                        models.
ScanBMAcontrol          Control parameters for 'ScanBMA'
scores                  Scores for assessment from contingency tables.
summary.networkBMA      Summarizes a 'networkBMA' object.
varord                  Variable orderings for linear regression.
vignette                The subsets of the yeast-rapamycin time-series
                        data from Yeung et al. (2011) and Lo et al.
                        (2011), and of the static yeast gene-expression
                        data from Brem et al. (2002, 2005), that are
                        used in the 'networkBMA' package vignette.
writeEdges              Output network edges to text in
                        Cytoscape-readable format.
