adjustRT                Adjust retention time
alignData,ncGTWoutput-method
                        ncGTWoutput-accessors
compCV                  Compare CV
fillPeaksChromPar       Edited XCMS fillPeaksChromPar for feature-wise
                        warping functions
getPeaksncGTW           Edited XCMS getPeaks for feature-wise warping
                        functions
groupInfo,ncGTWinput-method
                        ncGTWinput-accessors
loadProfile             Load sample profiles for each peak group
meanCorOl               Compute average pairwise correlation and
                        overlapping area
misalignDetect          Detect misaligned peak groups in xcmsSet object
                        of XCMS
ncGTW-package           ncGTW: A package for detecting and aligning the
                        misaligned features in LC-MS data
ncGTWalign              Run ncGTW alignment
ncGTWinput-class        Class "ncGTWinput"
ncGTWoutput-class       Class "ncGTWoutput"
ncGTWparam-class        Class "ncGTWparam"
ncGTWwarp-class         Class "ncGTWwarp"
plotGroup               Plot profiles for each peak group
rtncGTW,ncGTWwarp-method
                        ncGTWwarp-accessors
xcmsExamples            Examples of xcmsSet for inputs of ncGTW
