# Visualise methlation data from Oxford Nanopore sequencing

## Documentation for package ‘NanoMethViz’ version 2.0.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

bsseq_to_edger | Convert BSseq object to edgeR methylation matrix
bsseq_to_log_methy_ratio | Convert BSseq object to log-methylation-ratio matrix
create_tabix_file | Create a tabix file using methylation calls
exons-method | Nanopore Methylation Result
exons<--method | Nanopore Methylation Result
exons_to_genes | Convert exon annotation to genes
get_example_exons_mus_musculus | Get example exon annotations for mus musculus
get_exons_homo_sapiens | Get exon annotations for homo sapiens
get_exons_mus_musculus | Get exon annotations for mus musculus
load_example_nanomethresult | Load an example NanoMethResult object
methy-method | Nanopore Methylation Result
methy<--method | Nanopore Methylation Result
methy_col_names | Column names for methylation data
methy_to_bsseq | Create BSSeq object from methylation tabix file
NanoMethResult | Nanopore Methylation Result
NanoMethResult-class | Nanopore Methylation Result
plot_agg_regions | Plot aggregate regions
plot_gene | Plot gene
plot_gene-method | Plot gene
plot_gene_heatmap | Plot gene methylation heatmap
plot_gene_heatmap-method | Plot gene methylation heatmap
plot_grange | Plot GRanges
plot_grange_heatmap | Plot GRanges heatmap
plot_mds | Plot MDS
plot_pca | Plot PCA
plot_region | Plot region
plot_region-method | Plot region
plot_region_heatmap | Plot region methylation heatmap
plot_region_heatmap-method | Plot region methylation heatmap
query_exons | Query exons
query_exons_gene_id | Query exons
query_exons_region | Query exons
query_exons_symbol | Query exons
query_methy | Query methylation data
samples-method | Nanopore Methylation Result
samples<--method | Nanopore Methylation Result