Package: MutationalPatterns
Type: Package
Title: Comprehensive genome-wide analysis of mutational processes
Description: An extensive toolset for the characterization and visualization
    of a wide range of mutational patterns in base substitution catalogs.
Version: 1.4.1
Date: 2017-10-25
Author: Francis Blokzijl, Roel Janssen, Ruben van Boxtel, Edwin Cuppen
Maintainer: Francis Blokzijl <F.Blokzijl@umcutrecht.nl>,
 Roel Janssen <R.R.E.Janssen-10@umcutrecht.nl>
License: MIT + file LICENSE
URL: https://doi.org/10.1101/071761
Imports: stats, parallel, S4Vectors, BiocGenerics (>= 0.18.0),
        VariantAnnotation (>= 1.18.1), reshape2 (>= 1.4.1), plyr (>=
        1.8.3), ggplot2 (>= 2.1.0), pracma (>= 1.8.8),
        SummarizedExperiment (>= 1.2.2), IRanges (>= 2.6.0),
        GenomeInfoDb (>= 1.12.0), Biostrings (>= 2.40.0), gridExtra (>=
        2.2.1), ggdendro (>= 0.1-20), cowplot (>= 0.7.0)
Depends: R (>= 3.4.0), GenomicRanges (>= 1.24.0), NMF (>= 0.20.6)
Suggests: BSgenome (>= 1.40.0), BiocStyle (>= 2.0.3), biomaRt (>=
        2.28.0), BSgenome.Hsapiens.UCSC.hg19 (>= 1.4.0),
        BSgenome.Hsapiens.1000genomes.hs37d5 (>= 0.99.1),
        TxDb.Hsapiens.UCSC.hg19.knownGene (>= 3.2.2), rtracklayer (>=
        1.32.2), testthat
biocViews: Genetics, SomaticMutation
ZipData: NA
LazyData: false
RoxygenNote: 6.0.1
Encoding: UTF-8
NeedsCompilation: no
Packaged: 2017-11-14 02:07:47 UTC; biocbuild
Built: R 3.4.1; ; 2017-12-14 11:10:30 UTC; unix
