annotSite	annotSite
dataProcessPlotsPTM	dataProcessPlotsPTM
dataSummarizationPTM	dataSummarizationPTM
dataSummarizationPTM_TMT	dataSummarizationPTM_TMT
groupComparisonPlotsPTM	groupComparisonPlotsPTM
groupComparisonPTM	groupComparisonPTM
locateMod	locateMod
locatePTM	locatePTM
MaxQtoMSstatsPTMFormat	MaxQtoMSstatsPTMFormat
MSstatsPTM	MSstatsPTM
ProgenesistoMSstatsPTMFormat	ProgenesistoMSstatsPTMFormat
raw.input	raw.input
raw.input.tmt	raw.input.tmt
SpectronauttoMSstatsPTMFormat	SpectronauttoMSstatsPTMFormat
summary.data	summary.data
summary.data.tmt	summary.data.tmt
tidyFasta	tidyFasta
