Cfp1-Peaks	Cfp1-Peaks
compDists	compDists
compHists	compHists
compPvals	compPvals
Contrast	myGeneric
Contrast,DBAmmd-method	DBAmmd-Accessors
Counts	myGeneric
Counts,DBAmmd-method	DBAmmd-Accessors
DBAmmd	DBAmmd-class
DBAmmd-Accessors	DBAmmd-Accessors
DBAmmd-class	DBAmmd-class
Dists	myGeneric
Dists,DBAmmd-method	DBAmmd-Accessors
estimateFragmentCenters	estimateFragmentCenters
Genome	myGeneric
Genome,DBAmmd-method	DBAmmd-Accessors
getPeakReads	getPeakReads
Hists	myGeneric
Hists,DBAmmd-method	DBAmmd-Accessors
metaData	myGeneric
metaData,DBAmmd-method	DBAmmd-Accessors
mm9-Genes	mm9-Genes
MMD	MMD
numPeaks	myGeneric
numPeaks,DBAmmd-method	DBAmmd-Accessors
numSamples	myGeneric
numSamples,DBAmmd-method	DBAmmd-Accessors
plotDists	plotDists
plotDISTS4Peak	plotDISTS4Peak
plotPeak	plotPeak
Reads	myGeneric
Reads,DBAmmd-method	DBAmmd-Accessors
Regions	myGeneric
Regions,DBAmmd-method	DBAmmd-Accessors
reportResults	reportResults
runShinyMMDiff2	runShinyMMDiff2
Samples	myGeneric
Samples,DBAmmd-method	DBAmmd-Accessors
server.MMDiff2	server.MMDiff2
setContrast	myGeneric
setContrast,DBAmmd-method	DBAmmd-Accessors
setRegions	myGeneric
setRegions,DBAmmd-method	DBAmmd-Accessors
ui.MMDiff2	ui.MMDiff2
