bam2R_10x	bam2R_10x
baseCountsFromBamList	baseCountsFromBamList
clusterMetaclones	clusterMetaclones
data	data
exclusionlists	data
getAlleleCount	getAlleleCount
getCloneLikelihood	getCloneLikelihood
getConfidence	getCloneLikelihood
getMainClone	getCloneLikelihood
getMut2Clone	getCloneLikelihood
getVarsCandidate	getVarsCandidate
mitoPlot	mitoPlot
mut2GR	mut2GR
mutationCalls	mutationCalls-class
mutationCalls-class	mutationCalls-class
mutationCallsFromCohort	mutationCallsFromCohort
mutationCallsFromExclusionlist	mutationCallsFromExclusionlist
mutationCallsFromMatrix	mutationCallsFromMatrix
M_P1	data
M_P2	data
N_P1	data
N_P2	data
overwriteMetaclones	overwriteMetaclones
plotClones	plotClones
pullcountsVars	pullcountsVars
quick_cluster	quick_cluster
removeWindow	removeWindow
setVarsCandidate	setVarsCandidate
varCluster	varCluster
