# This file created by conda-build 3.15.1
# meta.yaml template originally from:
# /Users/distiller/project/recipes/bioconductor-methylumi, last modified Tue Oct 23 19:39:30 2018
# ------------------------------------------------

package:
    name: bioconductor-methylumi
    version: 2.26.0
source:
    sha256: 57c7dd21135f97eb787d09ed8807eb5c5971b0c43dd55627208d9b0256ab662d
    url:
        - http://bioconductor.org/packages/3.7/bioc/src/contrib/methylumi_2.26.0.tar.gz
        - https://bioarchive.galaxyproject.org/methylumi_2.26.0.tar.gz
        - https://depot.galaxyproject.org/software/bioconductor-methylumi/bioconductor-methylumi_2.26.0_src_all.tar.gz
build:
    number: '0'
    rpaths:
        - lib/
        - lib/R/lib/
    string: r351_0
requirements:
    host:
        - bioconductor-annotate 1.58.0 r351_0
        - bioconductor-annotationdbi 1.42.1 r351_0
        - bioconductor-biobase 2.40.0 r351h470a237_0
        - bioconductor-biocgenerics 0.26.0 r351_0
        - bioconductor-biocparallel 1.14.2 r351h26a2512_0
        - bioconductor-biomart 2.36.1 r351_0
        - bioconductor-biostrings 2.48.0 r351h470a237_0
        - bioconductor-bumphunter 1.22.0 r351_0
        - bioconductor-delayedarray 0.6.6 r351_0
        - bioconductor-delayedmatrixstats 1.2.0 r351_0
        - bioconductor-fdb.infiniummethylation.hg19 2.2.0 r351_3
        - bioconductor-genefilter 1.62.0 r351h26a2512_0
        - bioconductor-genomeinfodb 1.16.0 r351_0
        - bioconductor-genomeinfodbdata 1.1.0 r351_0
        - bioconductor-genomicalignments 1.16.0 r351h470a237_0
        - bioconductor-genomicfeatures 1.32.3 r351_0
        - bioconductor-genomicranges 1.32.7 r351h470a237_0
        - bioconductor-geoquery 2.48.0 r351_0
        - bioconductor-hdf5array 1.8.1 r351_0
        - bioconductor-illuminaio 0.22.0 r351h470a237_0
        - bioconductor-iranges 2.14.12 r351h470a237_0
        - bioconductor-limma 3.36.5 r351h470a237_0
        - bioconductor-minfi 1.26.2 r351_0
        - bioconductor-multtest 2.36.0 r351h470a237_0
        - bioconductor-org.hs.eg.db 3.6.0 r351_0
        - bioconductor-preprocesscore 1.42.0 r351h470a237_0
        - bioconductor-rhdf5 2.24.0 r351hfc679d8_0
        - bioconductor-rhdf5lib 1.2.1 r351h470a237_0
        - bioconductor-rsamtools 1.32.3 r351hfc679d8_0
        - bioconductor-rtracklayer 1.40.6 r351h470a237_0
        - bioconductor-s4vectors 0.18.3 r351h470a237_0
        - bioconductor-siggenes 1.54.0 r351_0
        - bioconductor-summarizedexperiment 1.10.1 r351_0
        - bioconductor-txdb.hsapiens.ucsc.hg19.knowngene 3.2.2 r351_3
        - bioconductor-xvector 0.20.0 r351h470a237_0
        - bioconductor-zlibbioc 1.26.0 r351h470a237_0
        - ca-certificates 2018.10.15 ha4d7672_0
        - cairo 1.14.12 h276e583_5
        - curl 7.61.0 h93b3f91_2
        - fontconfig 2.13.1 hce039c3_0
        - freetype 2.9.1 h6debe1e_4
        - gettext 0.19.8.1 h1f1d5ed_1
        - glib 2.56.2 h464dc38_0
        - graphite2 1.3.12 h7d4d677_1
        - gsl 2.2.1 h002c638_3
        - harfbuzz 1.9.0 h04dbb29_1
        - icu 58.2 hfc679d8_0
        - jpeg 9c h470a237_1
        - krb5 1.14.6 0
        - libffi 3.2.1 hfc679d8_5
        - libgfortran 3.0.0 1
        - libiconv 1.15 h470a237_3
        - libpng 1.6.35 ha92aebf_2
        - libssh2 1.8.0 h5b517e9_2
        - libtiff 4.0.9 he6b73bb_2
        - libxml2 2.9.8 h422b904_5
        - ncurses 6.1 hfc679d8_1
        - openssl 1.0.2p h470a237_1
        - pango 1.40.14 he752989_2
        - pcre 8.41 hfc679d8_3
        - pixman 0.34.0 h470a237_3
        - r-assertthat 0.2.0 r351h6115d3f_1
        - r-base 3.5.1 h4fe35fd_1
        - r-base64 2.0 r351_1
        - r-beanplot 1.2 r351_1
        - r-bh 1.66.0_1 r351_1
        - r-bibtex 0.4.2 r351hc070d10_2
        - r-bindr 0.1.1 r351h6115d3f_1
        - r-bindrcpp 0.2.2 r351h9d2a408_1
        - r-bit 1.1_12 r351h470a237_2
        - r-bit64 0.9_7 r351hc070d10_0
        - r-bitops 1.0_6 r351hc070d10_2
        - r-blob 1.1.1 r351_1
        - r-cli 1.0.0 r351h6115d3f_1
        - r-codetools 0.2_15 r351h6115d3f_1
        - r-colorspace 1.3_2 r351hc070d10_2
        - r-crayon 1.3.4 r351h6115d3f_1
        - r-curl 3.2 r351hc070d10_2
        - r-data.table 1.11.4 r351hc070d10_2
        - r-dbi 1.0.0 r351h6115d3f_1
        - r-digest 0.6.18 r351hc070d10_0
        - r-dorng 1.7.1 r351h6115d3f_0
        - r-dplyr 0.7.6 r351h9d2a408_1
        - r-fansi 0.3.0 r351hc070d10_0
        - r-foreach 1.4.4 r351h6115d3f_1
        - r-formatr 1.5 r351h6115d3f_1
        - r-futile.logger 1.4.3 r351h6115d3f_1
        - r-futile.options 1.0.1 r351h6115d3f_0
        - r-ggplot2 3.0.0 r351h6115d3f_1
        - r-glue 1.3.0 r351h470a237_2
        - r-gtable 0.2.0 r351h6115d3f_1
        - r-hms 0.4.2 r351h6115d3f_0
        - r-httr 1.3.1 r351h6115d3f_1
        - r-iterators 1.0.10 r351h6115d3f_1
        - r-jsonlite 1.5 r351hc070d10_2
        - r-labeling 0.3 r351h6115d3f_1
        - r-lambda.r 1.2.3 r351h6115d3f_0
        - r-lattice 0.20_35 r351hc070d10_0
        - r-lazyeval 0.2.1 r351hc070d10_2
        - r-locfit 1.5_9.1 r351h470a237_2
        - r-magrittr 1.5 r351h6115d3f_1
        - r-mass 7.3_50 r351hc070d10_2
        - r-matrix 1.2_14 r351hc070d10_2
        - r-matrixstats 0.54.0 r351hc070d10_0
        - r-mclust 5.4.1 r351h364d78e_2
        - r-memoise 1.1.0 r351h6115d3f_1
        - r-mgcv 1.8_24 r351hc070d10_2
        - r-mime 0.5 r351hc070d10_2
        - r-munsell 0.5.0 r351h6115d3f_1
        - r-nlme 3.1_137 r351h364d78e_0
        - r-nor1mix 1.2_3 r351_1
        - r-openssl 1.0.2 r351h9f97512_0
        - r-pillar 1.3.0 r351h6115d3f_0
        - r-pkgconfig 2.0.2 r351h6115d3f_1
        - r-pkgmaker 0.27 r351h6115d3f_0
        - r-plogr 0.2.0 r351h6115d3f_1
        - r-plyr 1.8.4 r351h9d2a408_2
        - r-prettyunits 1.0.2 r351h6115d3f_1
        - r-progress 1.2.0 r351h6115d3f_2
        - r-purrr 0.2.5 r351hc070d10_1
        - r-quadprog 1.5_5 r351h364d78e_2
        - r-r6 2.2.2 r351h6115d3f_1
        - r-rcolorbrewer 1.1_2 r351h6115d3f_1
        - r-rcpp 0.12.17 r351h9d2a408_2
        - r-rcurl 1.95_4.11 r351h86b9717_2
        - r-readr 1.1.1 r351h9d2a408_2
        - r-registry 0.5 r351h6115d3f_1
        - r-reshape 0.8.7 r351hc070d10_2
        - r-reshape2 1.4.3 r351h9d2a408_2
        - r-rlang 0.3.0 r351h470a237_0
        - r-rngtools 1.3.1 r351h6115d3f_1
        - r-rsqlite 2.1.1 r351h9d2a408_0
        - r-scales 1.0.0 r351h9d2a408_1
        - r-snow 0.4_3 r351h6115d3f_0
        - r-stringi 1.2.4 r351h9d2a408_1
        - r-stringr 1.3.1 r351h6115d3f_1
        - r-survival 2.42_6 r351hc070d10_1
        - r-tibble 1.4.2 r351hc070d10_2
        - r-tidyr 0.8.1 r351h9d2a408_2
        - r-tidyselect 0.2.4 r351h9d2a408_2
        - r-utf8 1.1.4 r351hc070d10_0
        - r-viridislite 0.3.0 r351h6115d3f_1
        - r-withr 2.1.2 r351h6115d3f_0
        - r-xml 3.98_1.16 r351hc070d10_0
        - r-xml2 1.2.0 r351h9d2a408_2
        - r-xtable 1.8_3 r351_0
        - readline 7.0 haf1bffa_1
        - tk 8.6.8 ha92aebf_0
        - wget 1.19.5 hf30b1f0_0
        - xz 5.2.4 h470a237_1
        - zlib 1.2.11 h470a237_3
    run:
        - bioconductor-annotate >=1.58.0,<1.60.0
        - bioconductor-annotationdbi >=1.42.1,<1.44.0
        - bioconductor-biobase >=2.40.0,<2.42.0
        - bioconductor-biocgenerics >=0.26.0,<0.28.0
        - bioconductor-fdb.infiniummethylation.hg19 >=2.2.0,<2.4.0
        - bioconductor-genefilter >=1.62.0,<1.64.0
        - bioconductor-genomeinfodb >=1.16.0,<1.18.0
        - bioconductor-genomicranges >=1.32.7,<1.34.0
        - bioconductor-illuminaio >=0.22.0,<0.24.0
        - bioconductor-iranges >=2.14.12,<2.16.0
        - bioconductor-minfi >=1.26.2,<1.28.0
        - bioconductor-s4vectors >=0.18.3,<0.20.0
        - bioconductor-summarizedexperiment >=1.10.1,<1.12.0
        - r-base >=3.5.1,<3.5.2.0a0
        - r-ggplot2
        - r-lattice
        - r-matrixstats
        - r-reshape2
        - r-scales
test:
    commands:
        - $R -e "library('methylumi')"
about:
    home: http://bioconductor.org/packages/3.7/bioc/html/methylumi.html
    license: GPL-2
    summary: This package provides classes for holding and manipulating Illumina methylation
        data.  Based on eSet, it can contain MIAME information, sample information,
        feature information, and multiple matrices of data.  An "intelligent" import
        function, methylumiR can read the Illumina text files and create a MethyLumiSet.
        methylumIDAT can directly read raw IDAT files from HumanMethylation27 and
        HumanMethylation450 microarrays.  Normalization, background correction, and
        quality control features for GoldenGate, Infinium, and Infinium HD arrays
        are also included.
extra:
    copy_test_source_files: true
    final: true
    identifiers:
        - biotools:methylumi
        - doi:10.1186/1471-2164-14-293
