# A framework for rapid prototyping with binary data on disk

## Documentation for package ‘matter’ version 1.4.1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

A B C D E F H I L M N P R S T V W misc

## -- A --

adata | Vectors, Matrices, and Arrays Stored on Disk
adata-method | Vectors, Matrices, and Arrays Stored on Disk
apply | Apply Functions Over "matter" Matrices
apply-method | Apply Functions Over "matter" Matrices
Arith-method | Delayed Operations on "matter" Objects
as.matter | Vectors, Matrices, and Arrays Stored on Disk
atomdata | Vectors, Matrices, and Arrays Stored on Disk
atomdata-method | Vectors, Matrices, and Arrays Stored on Disk
atomdata<- | Vectors, Matrices, and Arrays Stored on Disk
atomdata<--method | Vectors, Matrices, and Arrays Stored on Disk

## -- B --

bigglm-method | Using "biglm" with "matter"
bigglm.out | Examples for "matter" package

## -- C --

c-method | Delta Run Length Encoding
c-method | Vectors, Matrices, and Arrays Stored on Disk
c-method | Vectors Stored on Disk
cbind-method | Matrices Stored on Disk
chunksize | Vectors, Matrices, and Arrays Stored on Disk
chunksize-method | Vectors, Matrices, and Arrays Stored on Disk
chunksize<- | Vectors, Matrices, and Arrays Stored on Disk
chunksize<--method | Vectors, Matrices, and Arrays Stored on Disk
class:drle | Delta Run Length Encoding
class:matter | Vectors, Matrices, and Arrays Stored on Disk
class:matter_arr | Arrays Stored on Disk
class:matter_df | Data Frames Stored on Disk
class:matter_fc | Factors Stored on Disk
class:matter_list | Lists of Vectors Stored on Disk
class:matter_mat | Matrices Stored on Disk
class:matter_str | Strings Stored on Disk
class:matter_vec | Vectors Stored on Disk
colMeans-method | Summary Statistics for "matter" Objects
colSds | Summary Statistics for "matter" Objects
colSds-method | Summary Statistics for "matter" Objects
colSums-method | Summary Statistics for "matter" Objects
colVars | Summary Statistics for "matter" Objects
colVars-method | Summary Statistics for "matter" Objects
Compare-method | Delayed Operations on "matter" Objects
crossprod-method | Matrices Stored on Disk

## -- D --

data:matter_ex | Examples for "matter" package
data:matter_msi | Examples for "matter" package
data:matter_sim | Examples for "matter" package
datamode | Vectors, Matrices, and Arrays Stored on Disk
datamode-method | Vectors, Matrices, and Arrays Stored on Disk
datamode<- | Vectors, Matrices, and Arrays Stored on Disk
datamode<--method | Vectors, Matrices, and Arrays Stored on Disk
dim-method | Vectors, Matrices, and Arrays Stored on Disk
dim<--method | Vectors, Matrices, and Arrays Stored on Disk
dimnames-method | Vectors, Matrices, and Arrays Stored on Disk
dimnames<--method | Vectors, Matrices, and Arrays Stored on Disk
dimnames<--method | Data Frames Stored on Disk
drle | Delta Run Length Encoding
drle-class | Delta Run Length Encoding

## -- E --

exp-method | Delayed Operations on "matter" Objects

## -- F --

filemode | Vectors, Matrices, and Arrays Stored on Disk
filemode-method | Vectors, Matrices, and Arrays Stored on Disk
filemode<- | Vectors, Matrices, and Arrays Stored on Disk
filemode<--method | Vectors, Matrices, and Arrays Stored on Disk

## -- H --

head-method | Data Frames Stored on Disk

## -- I --

is.drle | Delta Run Length Encoding
is.matter | Vectors, Matrices, and Arrays Stored on Disk

## -- L --

length-method | Delta Run Length Encoding
length-method | Vectors, Matrices, and Arrays Stored on Disk
length<--method | Vectors, Matrices, and Arrays Stored on Disk
lengths-method | Lists of Vectors Stored on Disk
lengths-method | Strings Stored on Disk
levels-method | Factors Stored on Disk
levels<--method | Factors Stored on Disk
lm.prof | Examples for "matter" package
log-method | Delayed Operations on "matter" Objects
log10-method | Delayed Operations on "matter" Objects
log2-method | Delayed Operations on "matter" Objects

## -- M --

matter | Vectors, Matrices, and Arrays Stored on Disk
matter-class | Vectors, Matrices, and Arrays Stored on Disk
matter_arr | Arrays Stored on Disk
matter_arr-class | Arrays Stored on Disk
matter_df | Data Frames Stored on Disk
matter_df-class | Data Frames Stored on Disk
matter_ex | Examples for "matter" package
matter_fc | Factors Stored on Disk
matter_fc-class | Factors Stored on Disk
matter_list | Lists of Vectors Stored on Disk
matter_list-class | Lists of Vectors Stored on Disk
matter_mat | Matrices Stored on Disk
matter_mat-class | Matrices Stored on Disk
matter_matc | Matrices Stored on Disk
matter_matc-class | Matrices Stored on Disk
matter_matr | Matrices Stored on Disk
matter_matr-class | Matrices Stored on Disk
matter_msi | Examples for "matter" package
matter_sim | Examples for "matter" package
matter_str | Strings Stored on Disk
matter_str-class | Strings Stored on Disk
matter_vec | Vectors Stored on Disk
matter_vec-class | Vectors Stored on Disk
mean | Summary Statistics for "matter" Objects
mean-method | Summary Statistics for "matter" Objects
mean.matter | Summary Statistics for "matter" Objects
mem | Profile Memory Use
msi.prof | Examples for "matter" package

## -- N --

names-method | Vectors, Matrices, and Arrays Stored on Disk
names<--method | Vectors, Matrices, and Arrays Stored on Disk
names<--method | Data Frames Stored on Disk

## -- P --

paths | Vectors, Matrices, and Arrays Stored on Disk
paths-method | Vectors, Matrices, and Arrays Stored on Disk
paths<- | Vectors, Matrices, and Arrays Stored on Disk
paths<--method | Vectors, Matrices, and Arrays Stored on Disk
pca.prof | Examples for "matter" package
prcomp | Principal Components Analysis for "matter" Matrices
prcomp-method | Principal Components Analysis for "matter" Matrices
prcomp.out | Examples for "matter" package
profmem | Profile Memory Use

## -- R --

rbind-method | Matrices Stored on Disk
rowMeans-method | Summary Statistics for "matter" Objects
rowSds | Summary Statistics for "matter" Objects
rowSds-method | Summary Statistics for "matter" Objects
rowSums-method | Summary Statistics for "matter" Objects
rowVars | Summary Statistics for "matter" Objects
rowVars-method | Summary Statistics for "matter" Objects

## -- S --

scale | Scaling and Centering of "matter" Matrices
scale-method | Scaling and Centering of "matter" Matrices
scale.matter | Scaling and Centering of "matter" Matrices
sd | Summary Statistics for "matter" Objects
sd-method | Summary Statistics for "matter" Objects
sum | Summary Statistics for "matter" Objects
sum-method | Summary Statistics for "matter" Objects

## -- T --

t-method | Matrices Stored on Disk
t-method | Vectors Stored on Disk
t.matter | Matrices Stored on Disk
tail-method | Data Frames Stored on Disk
tcrossprod-method | Matrices Stored on Disk

## -- V --

var | Summary Statistics for "matter" Objects
var-method | Summary Statistics for "matter" Objects

## -- W --

which-method | Vectors, Matrices, and Arrays Stored on Disk

## -- misc --

$-method | Data Frames Stored on Disk
$<--method | Data Frames Stored on Disk
%*%-method | Matrices Stored on Disk
[-method | Delta Run Length Encoding
[-method | Vectors, Matrices, and Arrays Stored on Disk
[-method | Arrays Stored on Disk
[-method | Data Frames Stored on Disk
[-method | Factors Stored on Disk
[-method | Lists of Vectors Stored on Disk
[-method | Matrices Stored on Disk
[-method | Strings Stored on Disk
[-method | Vectors Stored on Disk
[<--method | Arrays Stored on Disk
[<--method | Data Frames Stored on Disk
[<--method | Factors Stored on Disk
[<--method | Lists of Vectors Stored on Disk
[<--method | Matrices Stored on Disk
[<--method | Strings Stored on Disk
[<--method | Vectors Stored on Disk
[[-method | Vectors, Matrices, and Arrays Stored on Disk
[[-method | Data Frames Stored on Disk
[[-method | Lists of Vectors Stored on Disk
[[-method | Strings Stored on Disk
[[<--method | Data Frames Stored on Disk
[[<--method | Lists of Vectors Stored on Disk
[[<--method | Strings Stored on Disk