align2manta	in2manta
cmdArgsToVariables	cmdArgsToVariables
collapseRepliCounts	collapseRepliCounts
compbiasPlot	compbiasPlot
compbiasTest	compbiasTest
counts2manta	in2manta
generateWeights	generateWeights
in2manta	in2manta
makeSampleDF	makeSampleDF
manta	manta
manta-class	manta-class
manta.ra	plot.manta
meta2counts	meta2counts
metataxa2subcounts	metataxa2subcounts
nf2nr	nf2nr
normfact2absTMM	normfact2absTMM
nr	nr
outGenes	outliers
plot.manta	plot.manta
pplacer2manta	pplacer2manta
readSeastar	readSeastar
seastar2counts	seastar2counts
summary.manta	summary.manta
tableMetas	in2manta
tableMetaSums	in2manta
