# This file created by conda-build 3.15.1
# meta.yaml template originally from:
# /Users/distiller/project/recipes/bioconductor-madseq, last modified Tue Oct 23 01:09:38 2018
# ------------------------------------------------

package:
    name: bioconductor-madseq
    version: 1.6.1
source:
    sha256: 00b90dd7263a14723a0405319c7a2598b27938f9271d722f51afb468f1857ec6
    url:
        - http://bioconductor.org/packages/3.7/bioc/src/contrib/MADSEQ_1.6.1.tar.gz
        - https://bioarchive.galaxyproject.org/MADSEQ_1.6.1.tar.gz
        - https://depot.galaxyproject.org/software/bioconductor-madseq/bioconductor-madseq_1.6.1_src_all.tar.gz
build:
    number: '0'
    rpaths:
        - lib/
        - lib/R/lib/
    string: r341_0
requirements:
    host:
        - bioconductor-annotationdbi 1.42.1 r341_0
        - bioconductor-biobase 2.40.0 r341h470a237_0
        - bioconductor-biocgenerics 0.26.0 r341_0
        - bioconductor-biocparallel 1.14.2 r341h26a2512_0
        - bioconductor-biomart 2.36.1 r341_0
        - bioconductor-biostrings 2.48.0 r341h470a237_0
        - bioconductor-bsgenome 1.48.0 r341_0
        - bioconductor-bsgenome.hsapiens.ucsc.hg19 1.4.0 r341_4
        - bioconductor-delayedarray 0.6.6 r341_0
        - bioconductor-genomeinfodb 1.16.0 r341_0
        - bioconductor-genomeinfodbdata 1.1.0 r341_0
        - bioconductor-genomicalignments 1.16.0 r341h470a237_0
        - bioconductor-genomicfeatures 1.32.3 r341_0
        - bioconductor-genomicranges 1.32.7 r341h470a237_0
        - bioconductor-iranges 2.14.12 r341h470a237_0
        - bioconductor-preprocesscore 1.42.0 r341h470a237_0
        - bioconductor-rsamtools 1.32.3 r341hfc679d8_0
        - bioconductor-rtracklayer 1.40.6 r341h470a237_0
        - bioconductor-s4vectors 0.18.3 r341h470a237_0
        - bioconductor-summarizedexperiment 1.10.1 r341_0
        - bioconductor-variantannotation 1.26.1 r341h470a237_0
        - bioconductor-xvector 0.20.0 r341h470a237_0
        - bioconductor-zlibbioc 1.26.0 r341h470a237_0
        - ca-certificates 2018.10.15 ha4d7672_0
        - cairo 1.14.12 h276e583_5
        - curl 7.61.0 h93b3f91_2
        - fontconfig 2.13.1 hce039c3_0
        - freetype 2.9.1 h6debe1e_4
        - gettext 0.19.8.1 h1f1d5ed_1
        - glib 2.56.2 h464dc38_0
        - graphite2 1.3.12 h7d4d677_1
        - gsl 2.2.1 h002c638_3
        - harfbuzz 1.9.0 h04dbb29_1
        - icu 58.2 hfc679d8_0
        - jags 4.3.0 h26a2512_0
        - jpeg 9c h470a237_1
        - krb5 1.14.6 0
        - lapack 3.6.1 1
        - libffi 3.2.1 hfc679d8_5
        - libgfortran 3.0.0 1
        - libgfortran-ng 3.0.1 h93005f0_2
        - libiconv 1.15 h470a237_3
        - libpng 1.6.35 ha92aebf_2
        - libssh2 1.8.0 h5b517e9_2
        - libtiff 4.0.9 he6b73bb_2
        - libxml2 2.9.8 h422b904_5
        - ncurses 6.1 hfc679d8_1
        - openssl 1.0.2p h470a237_1
        - pango 1.40.14 he752989_2
        - pcre 8.41 hfc679d8_3
        - pixman 0.34.0 h470a237_3
        - r-ape 5.1 r341h9d2a408_2
        - r-assertthat 0.2.0 r341h6115d3f_1
        - r-base 3.4.1 h4fe35fd_8
        - r-bh 1.66.0_1 r341_1
        - r-bindr 0.1.1 r341h6115d3f_1
        - r-bindrcpp 0.2.2 r341h9d2a408_1
        - r-bit 1.1_12 r341h470a237_2
        - r-bit64 0.9_7 r341hc070d10_0
        - r-bitops 1.0_6 r341hc070d10_2
        - r-blob 1.1.1 r341_1
        - r-cli 1.0.0 r341h6115d3f_1
        - r-cluster 2.0.7_1 r341h364d78e_0
        - r-coda 0.19_1 r341h6115d3f_1
        - r-crayon 1.3.4 r341h6115d3f_1
        - r-curl 3.2 r341hc070d10_2
        - r-dbi 1.0.0 r341h6115d3f_1
        - r-digest 0.6.18 r341hc070d10_0
        - r-dplyr 0.7.6 r341h9d2a408_1
        - r-fansi 0.3.0 r341hc070d10_0
        - r-formatr 1.5 r341h6115d3f_1
        - r-futile.logger 1.4.3 r341h6115d3f_1
        - r-futile.options 1.0.1 r341h6115d3f_0
        - r-glue 1.3.0 r341h470a237_2
        - r-hms 0.4.2 r341h6115d3f_0
        - r-httr 1.3.1 r341h6115d3f_1
        - r-jsonlite 1.5 r341hc070d10_2
        - r-lambda.r 1.2.3 r341h6115d3f_0
        - r-lattice 0.20_35 r341hc070d10_0
        - r-magrittr 1.5 r341h6115d3f_1
        - r-mass 7.3_50 r341hc070d10_2
        - r-matrix 1.2_14 r341hc070d10_2
        - r-matrixstats 0.54.0 r341hc070d10_0
        - r-memoise 1.1.0 r341h6115d3f_1
        - r-memuse 3.0_1 r341h470a237_2
        - r-mgcv 1.8_24 r341hc070d10_2
        - r-mime 0.5 r341hc070d10_2
        - r-nlme 3.1_137 r341h364d78e_0
        - r-openssl 1.0.2 r341h9f97512_0
        - r-permute 0.9_4 r341_2
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        - r-pinfsc50 1.1.0 r341_1
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        - r-plogr 0.2.0 r341h6115d3f_1
        - r-prettyunits 1.0.2 r341h6115d3f_1
        - r-progress 1.2.0 r341h6115d3f_2
        - r-purrr 0.2.5 r341hc070d10_1
        - r-r6 2.2.2 r341h6115d3f_1
        - r-rcpp 0.12.17 r341h9d2a408_2
        - r-rcurl 1.95_4.11 r341h86b9717_2
        - r-rjags 4_6 r341h9d2a408_2
        - r-rlang 0.3.0 r341h470a237_0
        - r-rsqlite 2.1.1 r341h9d2a408_0
        - r-snow 0.4_3 r341h6115d3f_0
        - r-stringi 1.2.4 r341h9d2a408_1
        - r-stringr 1.3.1 r341h6115d3f_1
        - r-tibble 1.4.2 r341hc070d10_2
        - r-tidyselect 0.2.4 r341h9d2a408_2
        - r-utf8 1.1.4 r341hc070d10_0
        - r-vcfr 1.8.0 r341h9d2a408_0
        - r-vegan 2.5_2 r341h364d78e_1
        - r-vgam 1.0_6 r341h364d78e_0
        - r-viridislite 0.3.0 r341h6115d3f_1
        - r-xml 3.98_1.16 r341hc070d10_0
        - readline 7.0 haf1bffa_1
        - tk 8.6.8 ha92aebf_0
        - wget 1.19.5 hf30b1f0_0
        - xz 5.2.4 h470a237_1
        - zlib 1.2.11 h470a237_3
    run:
        - bioconductor-biostrings >=2.48.0,<2.50.0
        - bioconductor-bsgenome >=1.48.0,<1.50.0
        - bioconductor-bsgenome.hsapiens.ucsc.hg19 >=1.4.0,<1.6.0
        - bioconductor-genomeinfodb >=1.16.0,<1.18.0
        - bioconductor-genomicalignments >=1.16.0,<1.18.0
        - bioconductor-genomicranges >=1.32.7,<1.34.0
        - bioconductor-iranges >=2.14.12,<2.16.0
        - bioconductor-preprocesscore >=1.42.0,<1.44.0
        - bioconductor-rsamtools >=1.32.3,<1.34.0
        - bioconductor-rtracklayer >=1.40.6,<1.42.0
        - bioconductor-s4vectors >=0.18.3,<0.20.0
        - bioconductor-summarizedexperiment >=1.10.1,<1.12.0
        - bioconductor-variantannotation >=1.26.1,<1.28.0
        - bioconductor-zlibbioc >=1.26.0,<1.28.0
        - r-base >=3.4.1,<3.4.2.0a0
        - r-coda
        - r-rjags >=4-6
        - r-vcfr
        - r-vgam
test:
    commands:
        - $R -e "library('MADSEQ')"
about:
    home: http://bioconductor.org/packages/3.7/bioc/html/MADSEQ.html
    license: GPL(>=2)
    summary: The MADSEQ package provides a group of hierarchical Bayeisan models for
        the detection of mosaic aneuploidy, the inference of the type of aneuploidy
        and also for the quantification of the fraction of aneuploid cells in the
        sample.
extra:
    copy_test_source_files: true
    final: true
    identifiers:
        - biotools:madseq
        - doi:10.1101/142299
