# This file created by conda-build 3.21.8
# meta.yaml template originally from:
# /Users/runner/work/bioconda-recipes/bioconda-recipes/recipes/bioconductor-isoformswitchanalyzer, last modified Thu Nov 10 07:47:55 2022
# ------------------------------------------------

package:
  name: bioconductor-isoformswitchanalyzer
  version: 1.20.0
source:
  md5: 2efe2bf8079453afa4e6e8a84ee737fd
  url:
    - https://bioarchive.galaxyproject.org/IsoformSwitchAnalyzeR_1.20.0.tar.gz
    - https://bioconductor.org/packages/3.16/bioc/src/contrib/IsoformSwitchAnalyzeR_1.20.0.tar.gz
    - https://depot.galaxyproject.org/software/bioconductor-isoformswitchanalyzer/bioconductor-isoformswitchanalyzer_1.20.0_src_all.tar.gz
build:
  number: '0'
  rpaths:
    - lib/
    - lib/R/lib/
  string: r42h3be46a4_0
requirements:
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  run:
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    - bioconductor-dexseq >=1.44.0,<1.45.0
    - bioconductor-drimseq >=1.26.0,<1.27.0
    - bioconductor-edger >=3.40.0,<3.41.0
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    - liblapack >=3.9.0,<4.0a0
    - r-base >=4.2,<4.3.0a0
    - r-dbi
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    - r-futile.logger
    - r-ggplot2
    - r-gridextra
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    - r-rcolorbrewer
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    - r-reshape2
    - r-stringr
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test:
  commands:
    - $R -e "library('IsoformSwitchAnalyzeR')"
about:
  description: Analysis of alternative splicing and isoform switches with predicted
    functional consequences (e.g. gain/loss of protein domains etc.) from quantification
    of all types of RNASeq by tools such as Kallisto, Salmon, StringTie, Cufflinks/Cuffdiff
    etc.
  home: https://bioconductor.org/packages/3.16/bioc/html/IsoformSwitchAnalyzeR.html
  license: GPL (>= 2)
  license_file: /Users/runner/miniconda/conda-bld/bioconductor-isoformswitchanalyzer_1668068904039/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/lib/R/share/licenses/GPL-3
  summary: Identify, Annotate and Visualize Alternative Splicing and Isoform Switches
    with Functional Consequences from both short- and long-read RNA-seq data.
extra:
  copy_test_source_files: true
  final: true
  identifiers:
    - biotools:IsoformSwitchAnalyzeR
    - doi:10.1158/1541-7786.MCR-16-0459
