Package: htSeqTools
Version: 1.28.3
Date: 2017-05-29
Title: Quality Control, Visualization and Processing for
        High-Throughput Sequencing data
Author: Evarist Planet, Camille Stephan-Otto, Oscar Reina, Oscar
        Flores, David Rossell
Maintainer: Oscar Reina <oscar.reina@irbbarcelona.org>
Depends: R (>= 2.12.2), methods, BiocGenerics (>= 0.1.0), Biobase,
        S4Vectors, IRanges, methods, MASS, BSgenome, GenomeInfoDb (>=
        1.1.3), GenomicRanges (>= 1.17.11)
Enhances: parallel,multicore
Description: We provide efficient, easy-to-use tools for
        High-Throughput Sequencing (ChIP-seq, RNAseq etc.). These
        include MDS plots (analogues to PCA), detecting inefficient
        immuno-precipitation or over-amplification artifacts, tools to
        identify and test for genomic regions with large accumulation
        of reads, and visualization of coverage profiles.
License: GPL (>=2)
LazyLoad: yes
Collate: ClassDefinitions.R GenericDefs.R alignPeaks.R extendRanges.R
        filterDuplReads.R mergeRegions.R stdPeakLocation.R
        rowLogRegLRT.R enrichedRegions.R enrichedPeaks.R listOverlap.R
        tabDuplReads.R cmdsFit-class.R cmds.R fdrEnrichedCounts.R
        islandCounts.R countRepeats.R ssdCoverage.R giniCoverage.R
        regionsCoverage.R gridCover-methods.R enrichedChrRegions.R
        plotChrRegions.R coverageDiff.R plotMeanCoverage.R
        findPeakHeight.R
biocViews: Sequencing, QualityControl
PackageStatus: Deprecated
NeedsCompilation: no
Packaged: 2018-06-04 23:22:44 UTC; biocbuild
Built: R 3.4.1; ; 2018-10-15 22:39:29 UTC; unix
