# HDF5 backend for DelayedArray objects

## Documentation for package ‘HDF5Array’ version 1.12.1

- DESCRIPTION file.
- Package NEWS.

## Help Pages

appendDatasetCreationToHDF5DumpLog | HDF5 dump management
chunkdim-method | HDF5ArraySeed objects
chunkdim-method | TENxMatrixSeed objects
chunkdim-method | Write an array-like object to an HDF5 file
class:HDF5Array | HDF5 datasets as DelayedArray objects
class:HDF5ArraySeed | HDF5ArraySeed objects
class:HDF5Matrix | HDF5 datasets as DelayedArray objects
class:HDF5RealizationSink | Write an array-like object to an HDF5 file
class:TENxMatrix | 10x Genomics datasets as DelayedMatrix objects
class:TENxMatrixSeed | TENxMatrixSeed objects
class:TENxRealizationSink | Write a matrix-like object as an HDF5-based sparse matrix
close-method | Write a matrix-like object as an HDF5-based sparse matrix
coerce-method | HDF5 datasets as DelayedArray objects
coerce-method | Write an array-like object to an HDF5 file
coerce-method | Write a matrix-like object as an HDF5-based sparse matrix
DelayedArray-method | HDF5 datasets as DelayedArray objects
DelayedArray-method | 10x Genomics datasets as DelayedMatrix objects
dim-method | HDF5ArraySeed objects
dim-method | TENxMatrixSeed objects
dimnames-method | TENxMatrixSeed objects
dimnames-method | Write an array-like object to an HDF5 file
dimnames-method | Write a matrix-like object as an HDF5-based sparse matrix
dump-management | HDF5 dump management
extractNonzeroDataByCol | 10x Genomics datasets as DelayedMatrix objects
extractNonzeroDataByCol-method | 10x Genomics datasets as DelayedMatrix objects
extractNonzeroDataByCol-method | TENxMatrixSeed objects
extract_array-method | HDF5ArraySeed objects
extract_array-method | TENxMatrixSeed objects
extract_sparse_array-method | TENxMatrixSeed objects
getHDF5DumpChunkDim | HDF5 dump management
getHDF5DumpChunkLength | HDF5 dump management
getHDF5DumpChunkShape | HDF5 dump management
getHDF5DumpCompressionLevel | HDF5 dump management
getHDF5DumpDir | HDF5 dump management
getHDF5DumpFile | HDF5 dump management
getHDF5DumpName | HDF5 dump management
get_h5mread_returned_type | An alternative to 'rhdf5::h5read'
h5mread | An alternative to 'rhdf5::h5read'
HDF5-dump-management | HDF5 dump management
HDF5Array | HDF5 datasets as DelayedArray objects
HDF5Array-class | HDF5 datasets as DelayedArray objects
HDF5ArraySeed | HDF5ArraySeed objects
HDF5ArraySeed-class | HDF5ArraySeed objects
HDF5Matrix | HDF5 datasets as DelayedArray objects
HDF5Matrix-class | HDF5 datasets as DelayedArray objects
HDF5RealizationSink | Write an array-like object to an HDF5 file
HDF5RealizationSink-class | Write an array-like object to an HDF5 file
is_sparse-method | TENxMatrixSeed objects
loadHDF5SummarizedExperiment | Save/load an HDF5-based SummarizedExperiment object
lsHDF5DumpFile | HDF5 dump management
matrixClass-method | HDF5 datasets as DelayedArray objects
path-method | HDF5ArraySeed objects
path-method | TENxMatrixSeed objects
path<--method | HDF5ArraySeed objects
path<--method | TENxMatrixSeed objects
quickResaveHDF5SummarizedExperiment | Save/load an HDF5-based SummarizedExperiment object
read_sparse_block-method | 10x Genomics datasets as DelayedMatrix objects
read_sparse_block-method | TENxMatrixSeed objects
saveHDF5SummarizedExperiment | Save/load an HDF5-based SummarizedExperiment object
setHDF5DumpChunkLength | HDF5 dump management
setHDF5DumpChunkShape | HDF5 dump management
setHDF5DumpCompressionLevel | HDF5 dump management
setHDF5DumpDir | HDF5 dump management
setHDF5DumpFile | HDF5 dump management
setHDF5DumpName | HDF5 dump management
show-method | TENxMatrixSeed objects
showHDF5DumpLog | HDF5 dump management
sparsity | 10x Genomics datasets as DelayedMatrix objects
sparsity-method | 10x Genomics datasets as DelayedMatrix objects
sparsity-method | TENxMatrixSeed objects
TENxMatrix | 10x Genomics datasets as DelayedMatrix objects
TENxMatrix-class | 10x Genomics datasets as DelayedMatrix objects
TENxMatrixSeed | TENxMatrixSeed objects
TENxMatrixSeed-class | TENxMatrixSeed objects
TENxRealizationSink | Write a matrix-like object as an HDF5-based sparse matrix
TENxRealizationSink-class | Write a matrix-like object as an HDF5-based sparse matrix
type-method | Write an array-like object to an HDF5 file
type-method | Write a matrix-like object as an HDF5-based sparse matrix
writeHDF5Array | Write an array-like object to an HDF5 file
writeTENxMatrix | Write a matrix-like object as an HDF5-based sparse matrix
write_block-method | Write an array-like object to an HDF5 file
write_block-method | Write a matrix-like object as an HDF5-based sparse matrix
write_sparse_block-method | Write a matrix-like object as an HDF5-based sparse matrix