# This file created by conda-build 3.21.4
# meta.yaml template originally from:
# /Users/runner/work/bioconda-recipes/bioconda-recipes/recipes/bioconductor-gpart, last modified Fri Jun  4 12:58:19 2021
# ------------------------------------------------

package:
  name: bioconductor-gpart
  version: 1.10.0
source:
  md5: a4447db156abeda91e7ae9c39584aad6
  url:
    - https://bioarchive.galaxyproject.org/gpart_1.10.0.tar.gz
    - https://bioconductor.org/packages/3.13/bioc/src/contrib/gpart_1.10.0.tar.gz
    - https://depot.galaxyproject.org/software/bioconductor-gpart/bioconductor-gpart_1.10.0_src_all.tar.gz
build:
  number: '0'
  rpaths:
    - lib/
    - lib/R/lib/
  string: r41h832b226_0
requirements:
  build:
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    - clang-11 11.1.0 default_he082bbe_1
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    - clangxx 11.1.0 default_he082bbe_1
    - clangxx_osx-64 11.1.0 h7e1b574_2
    - compiler-rt 11.1.0 h654b07c_0
    - compiler-rt_osx-64 11.1.0 h8c5fa43_0
    - ld64_osx-64 530 he8994da_21
    - ldid 2.1.2 h7660a38_2
    - libclang-cpp11.1 11.1.0 default_he082bbe_1
    - libcxx 11.1.0 habf9029_0
    - libllvm11 11.1.0 hd011deb_2
    - libllvm12 12.0.0 hd011deb_1
    - llvm-tools 11.1.0 hd011deb_2
    - make 4.3 h22f3db7_1
    - tapi 1100.0.11 h9ce4665_0
    - zlib 1.2.11 h7795811_1010
  host:
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    - bioconductor-biocfilecache 2.0.0 r41hdfd78af_0
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    - bioconductor-biostrings 2.60.0 r41h68a2ddb_0
    - bioconductor-delayedarray 0.18.0 r41h68a2ddb_0
    - bioconductor-genomeinfodb 1.28.0 r41hdfd78af_0
    - bioconductor-genomeinfodbdata 1.2.6 r41hdfd78af_0
    - bioconductor-genomicalignments 1.28.0 r41h68a2ddb_0
    - bioconductor-genomicfeatures 1.44.0 r41hdfd78af_0
    - bioconductor-genomicranges 1.44.0 r41h68a2ddb_0
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    - bioconductor-rhtslib 1.24.0 r41h68a2ddb_0
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    - clang_osx-64 11.1.0 hb91bd55_2
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    - gfortran_impl_osx-64 9.3.0 h9cc0e5e_22
    - gfortran_osx-64 9.3.0 h18f7dce_14
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    - lz4-c 1.9.3 h046ec9c_0
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    - xz 5.2.5 haf1e3a3_1
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    - zstd 1.5.0 h582d3a0_0
  run:
    - bioconductor-annotationdbi >=1.54.0,<1.55.0
    - bioconductor-biomart >=2.48.0,<2.49.0
    - bioconductor-genomicranges >=1.44.0,<1.45.0
    - bioconductor-homo.sapiens >=1.3.0,<1.4.0
    - bioconductor-iranges >=2.26.0,<2.27.0
    - bioconductor-organismdbi >=1.34.0,<1.35.0
    - bioconductor-txdb.hsapiens.ucsc.hg38.knowngene >=3.13.0,<3.14.0
    - libblas >=3.8.0,<4.0a0
    - libcxx >=11.1.0
    - liblapack >=3.8.0,<4.0a0
    - r-base >=4.1,<4.2.0a0
    - r-data.table
    - r-igraph
    - r-rcpp
test:
  commands:
    - $R -e "library('gpart')"
about:
  description: we provide a new SNP sequence partitioning method which partitions
    the whole SNP sequence based on not only LD block structures but also gene location
    information. The LD block construction for GPART is performed using Big-LD algorithm,
    with additional improvement from previous version reported in Kim et al.(2017).
    We also add a visualization tool to show the LD heatmap with the information of
    LD block boundaries and gene locations in the package.
  home: https://bioconductor.org/packages/3.13/bioc/html/gpart.html
  license: MIT + file LICENSE
  license_file: LICENSE
  summary: Human genome partitioning of dense sequencing data by identifying haplotype
    blocks
extra:
  copy_test_source_files: true
  final: true
