Package: gpart
Title: Human genome partitioning of dense sequencing data by
        identifying haplotype blocks
Version: 1.0.0
Authors@R: c(person(given = "Sun Ah", family = "Kim", role = c("aut", "cre", "cph"), email = "sunnyeesl@gmail.com"),
    person(given = "Yun Joo", family = "Yoo", role = c("aut", "cph")))
Depends: R (>= 3.5.0), grid, Homo.sapiens,
        TxDb.Hsapiens.UCSC.hg38.knownGene,
Description: we provide a new SNP sequence partitioning method which partitions the whole SNP sequence based on not only LD block structures but also gene location information. The LD block construction for GPART is performed using Big-LD algorithm, with additional improvement from previous version reported in Kim et al.(2017). We also add a visualization tool to show the LD heatmap with the information of LD block boundaries and gene locations in the package.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
biocViews: Software, Clustering
Imports: igraph, biomaRt, Rcpp, data.table, OrganismDbi, AnnotationDbi,
        grDevices, stats, utils, GenomicRanges, IRanges
LinkingTo: Rcpp
RoxygenNote: 6.1.0
Suggests: knitr, rmarkdown, BiocStyle, testthat
VignetteBuilder: knitr
git_url: https://git.bioconductor.org/packages/gpart
git_branch: RELEASE_3_8
git_last_commit: 1a7b9d8
git_last_commit_date: 2018-10-30
Date/Publication: 2018-10-30
NeedsCompilation: yes
Packaged: 2018-10-31 02:39:37 UTC; biocbuild
Author: Sun Ah Kim [aut, cre, cph],
  Yun Joo Yoo [aut, cph]
Maintainer: Sun Ah Kim <sunnyeesl@gmail.com>
Built: R 3.5.1; x86_64-apple-darwin13.4.0; 2018-12-23 22:53:52 UTC; unix
