# This file created by conda-build 3.19.2
# meta.yaml template originally from:
# /Users/runner/work/bioconda-recipes/bioconda-recipes/recipes/bioconductor-girafe, last modified Fri Oct 30 07:16:21 2020
# ------------------------------------------------

package:
    name: bioconductor-girafe
    version: 1.42.0
source:
    md5: 7e1ef25bf291900dce8dca2fa0f094ef
    url:
        - https://bioarchive.galaxyproject.org/girafe_1.42.0.tar.gz
        - https://bioconductor.org/packages/3.12/bioc/src/contrib/girafe_1.42.0.tar.gz
        - https://depot.galaxyproject.org/software/bioconductor-girafe/bioconductor-girafe_1.42.0_src_all.tar.gz
build:
    number: '0'
    rpaths:
        - lib/
        - lib/R/lib/
    string: r40h64ad5ed_0
requirements:
    build:
        - cctools 949.0.1 h22b1bf0_0
        - cctools_osx-64 949.0.1 h5ba7a2e_0
        - clang 9.0.1 default_hf57f61e_0
        - clang_osx-64 9.0.1 h05bbb7f_2
        - clangxx 9.0.1 default_hf57f61e_0
        - clangxx_osx-64 9.0.1 h05bbb7f_2
        - compiler-rt 9.0.1 h6a512c6_3
        - compiler-rt_osx-64 9.0.1 h99342c6_3
        - ld64 530 0
        - ld64_osx-64 530 h3c32e8a_0
        - libcxx 11.0.0 h439d374_0
        - libllvm9 9.0.1 h7475705_1
        - llvm-tools 9.0.1 h1341992_1
        - make 4.3 h22f3db7_1
        - tapi 1000.10.8 h879752b_4
        - zlib 1.2.11 h7795811_1010
    host:
        - _r-mutex 1.0.1 anacondar_1
        - bioconductor-biobase 2.50.0 r40h8909d69_0
        - bioconductor-biocgenerics 0.36.0 r40_0
        - bioconductor-biocparallel 1.24.0 r40h64ad5ed_0
        - bioconductor-biostrings 2.58.0 r40h8909d69_0
        - bioconductor-delayedarray 0.16.0 r40h8909d69_0
        - bioconductor-genomeinfodb 1.26.0 r40_0
        - bioconductor-genomeinfodbdata 1.2.4 r40_0
        - bioconductor-genomeintervals 1.46.0 r40_0
        - bioconductor-genomicalignments 1.26.0 r40h8909d69_0
        - bioconductor-genomicranges 1.42.0 r40h8909d69_0
        - bioconductor-iranges 2.24.0 r40h8909d69_0
        - bioconductor-matrixgenerics 1.2.0 r40_0
        - bioconductor-rhtslib 1.22.0 r40h8909d69_0
        - bioconductor-rsamtools 2.6.0 r40h64ad5ed_0
        - bioconductor-s4vectors 0.28.0 r40h8909d69_0
        - bioconductor-shortread 1.48.0 r40h64ad5ed_0
        - bioconductor-summarizedexperiment 1.20.0 r40_0
        - bioconductor-xvector 0.30.0 r40h8909d69_0
        - bioconductor-zlibbioc 1.36.0 r40h8909d69_0
        - bwidget 1.9.14 0
        - bzip2 1.0.8 haf1e3a3_3
        - c-ares 1.16.1 haf1e3a3_3
        - ca-certificates 2020.6.20 hecda079_0
        - cairo 1.16.0 h360c52f_1006
        - cctools_osx-64 949.0.1 h8e49ea9_16
        - clang 11.0.0 1
        - clang-11 11.0.0 default_h000dee7_1
        - clang_osx-64 11.0.0 h7c70c40_2
        - clangxx 11.0.0 default_hf57f61e_1
        - clangxx_osx-64 11.0.0 h043767d_2
        - compiler-rt 11.0.0 h01488ec_2
        - compiler-rt_osx-64 11.0.0 hd3c4e95_2
        - curl 7.71.1 hcb81553_8
        - fontconfig 2.13.1 h79c0d67_1002
        - freetype 2.10.4 ha233b18_0
        - fribidi 1.0.10 h0b31af3_0
        - gettext 0.19.8.1 haf92f58_1004
        - gfortran_impl_osx-64 9.3.0 h7d6baa2_13
        - gfortran_osx-64 9.3.0 h2de5253_10
        - gmp 6.2.0 hb1e8313_3
        - graphite2 1.3.13 h12caacf_1001
        - gsl 2.6 ha2d443c_0
        - harfbuzz 2.7.2 hf755100_1
        - icu 67.1 hb1e8313_0
        - isl 0.22.1 hb1e8313_2
        - jpeg 9d h0b31af3_0
        - krb5 1.17.1 h75d18d8_3
        - ld64_osx-64 530 h66d9e41_16
        - ldid 2.1.2 h7660a38_2
        - libblas 3.8.0 11_h508aa58_netlib
        - libcblas 3.8.0 11_h508aa58_netlib
        - libclang-cpp11 11.0.0 default_h000dee7_1
        - libcurl 7.71.1 h9bf37e3_8
        - libcxx 11.0.0 h439d374_0
        - libedit 3.1.20191231 h0678c8f_2
        - libev 4.33 haf1e3a3_1
        - libffi 3.2.1 hb1e8313_1007
        - libgfortran 5.0.0 h7cc5361_13
        - libgfortran-devel_osx-64 9.3.0 h7cc5361_13
        - libgfortran5 9.3.0 h7cc5361_13
        - libglib 2.66.2 hdb5fb44_0
        - libiconv 1.16 haf1e3a3_0
        - liblapack 3.8.0 11_h508aa58_netlib
        - libllvm11 11.0.0 hf85e3d2_0
        - libnghttp2 1.41.0 h7580e61_2
        - libpng 1.6.37 hb0a8c7a_2
        - libssh2 1.9.0 h8a08a2b_5
        - libtiff 4.1.0 h2ae36a8_6
        - libwebp-base 1.1.0 h0b31af3_3
        - libxml2 2.9.10 h2c6e4a5_2
        - llvm-openmp 11.0.0 h73239a0_1
        - llvm-tools 11.0.0 hf85e3d2_0
        - lz4-c 1.9.2 hb1e8313_3
        - make 4.3 h22f3db7_1
        - mpc 1.1.0 ha57cd0f_1009
        - mpfr 4.0.2 h72d8aaf_1
        - ncurses 6.2 hb1e8313_2
        - openssl 1.1.1h haf1e3a3_0
        - pango 1.42.4 h3431869_5
        - pcre 8.44 hb1e8313_0
        - pcre2 10.35 h977ceac_0
        - pixman 0.38.0 h01d97ff_1003
        - r-base 4.0.3 h280a0cc_2
        - r-bh 1.72.0_3 r40h6115d3f_1
        - r-bitops 1.0_6 r40h17f1fa6_1004
        - r-crayon 1.3.4 r40h6115d3f_1003
        - r-formatr 1.7 r40h6115d3f_2
        - r-futile.logger 1.4.3 r40h6115d3f_1003
        - r-futile.options 1.0.1 r40h6115d3f_1002
        - r-hwriter 1.3.2 r40h6115d3f_1003
        - r-intervals 0.15.2 r40hc5da6b9_1
        - r-jpeg 0.1_8.1 r40h17f1fa6_1
        - r-lambda.r 1.2.4 r40h6115d3f_1
        - r-lattice 0.20_41 r40h17f1fa6_2
        - r-latticeextra 0.6_29 r40h6115d3f_1
        - r-matrix 1.2_18 r40h26f5615_3
        - r-matrixstats 0.57.0 r40h800e0f2_0
        - r-png 0.1_7 r40h17f1fa6_1004
        - r-rcolorbrewer 1.1_2 r40h6115d3f_1003
        - r-rcurl 1.98_1.2 r40h17f1fa6_1
        - r-snow 0.4_3 r40h6115d3f_1002
        - readline 8.0 h0678c8f_2
        - tapi 1100.0.11 h9ce4665_0
        - tk 8.6.10 hb0a8c7a_1
        - tktable 2.10 h008db23_3
        - xz 5.2.5 haf1e3a3_1
        - zlib 1.2.11 h7795811_1010
        - zstd 1.4.5 h289c70a_2
    run:
        - bioconductor-biobase >=2.50.0,<2.51.0
        - bioconductor-biocgenerics >=0.36.0,<0.37.0
        - bioconductor-biostrings >=2.58.0,<2.59.0
        - bioconductor-genomeintervals >=1.46.0,<1.47.0
        - bioconductor-iranges >=2.24.0,<2.25.0
        - bioconductor-rsamtools >=2.6.0,<2.7.0
        - bioconductor-s4vectors >=0.28.0,<0.29.0
        - bioconductor-shortread >=1.48.0,<1.49.0
        - libblas >=3.8.0,<4.0a0
        - libcxx >=9.0.1
        - liblapack >=3.8.0,<4.0a0
        - r-base >=4.0,<4.1.0a0
        - r-intervals >=0.13.1
test:
    commands:
        - $R -e "library('girafe')"
about:
    description: The package 'girafe' deals with the genome-level representation of
        aligned reads from next-generation sequencing data. It contains an object
        class for enabling a detailed description of genome intervals with aligned
        reads and functions for comparing, visualising, exporting and working with
        such intervals and the aligned reads. As such, the package interacts with
        and provides a link between the packages ShortRead, IRanges and genomeIntervals.
    home: https://bioconductor.org/packages/3.12/bioc/html/girafe.html
    license: Artistic-2.0
    summary: Genome Intervals and Read Alignments for Functional Exploration
extra:
    copy_test_source_files: true
    final: true
    identifiers:
        - biotools:girafe
