ggtree-package	ggtree
%+>%	add_TREEINFO
%<%	update-TREE
%<+%	add-TREEDATA
%>%	pipe
.	dotFun
add_colorbar	add_colorbar
annotation_image	annotation_image
apeBoot	apeBoot
applyLayoutDaylight	applyLayoutDaylight
as.binary	as.binary
as.binary.phylo	as.binary
as.data.frame.phylo	as.data.frame.phylo
as.polytomy	as.polytomy
collapse	collapse
Date2decimal	Date2decimal
decimal2Date	decimal2Date
download.phylopic	download.phylopic
expand	expand
facet_plot	facet_plot
flip	flip
fortify.phylo	fortify
geom_aline	geom_aline
geom_balance	geom_balance
geom_cladelabel	geom_cladelabel
geom_hilight	geom_hilight
geom_label2	geom_label2
geom_nodepoint	geom_nodepoint
geom_point2	geom_point2
geom_range	geom_range
geom_rootpoint	geom_rootpoint
geom_segment2	geom_segment2
geom_strip	geom_strip
geom_taxalink	geom_taxalink
geom_text2	geom_text2
geom_tiplab	geom_tiplab
geom_tiplab2	geom_tiplab2
geom_tippoint	geom_tippoint
geom_tree	geom_tree
geom_tree2	geom_tree2
geom_treescale	geom_treescale
get.offspring.tip	get.offspring.tip
get.path	get.path
get.phylopic	get.phylopic
getChild.df	getChild.df
getNodeAngle.df	getNodeAngle.df
getNodesBreadthFirst.df	getNodesBreadthFirst.df
getParent.df	getParent.df
getSubtree	getSubtree
GetSubtree.df	GetSubtree.df
GetSubtreeUnrooted	GetSubtreeUnrooted
getSubtreeUnrooted.df	getSubtreeUnrooted.df
getTreeArcAngles	getTreeArcAngles
get_balance_position	get_balance_position
get_clade_position	get_clade_position
get_heatmap_column_position	get_heatmap_column_position
get_taxa_name	get_taxa_name
ggtree	ggtree
gheatmap	gheatmap
groupClade	groupClade-methods
groupClade,ggtree-method	groupClade-methods
groupOTU	groupOTU-methods
groupOTU,ggtree-method	groupOTU-methods
gzoom	gzoom-methods
gzoom,beast-method	gzoom-methods
gzoom,codeml-method	gzoom-methods
gzoom,ggtree-method	gzoom-methods
gzoom,paml_rst-method	gzoom-methods
gzoom,phylo-method	gzoom-methods
gzoom,treedata-method	gzoom-methods
gzoom.phylo	gzoom.phylo
identify.gg	identify
inset	inset
layoutDaylight	layoutDaylight
layoutEqualAngle	layoutEqualAngle
MRCA	MRCA
msaplot	msaplot
multiplot	multiplot
NJ	NJ
nodebar	nodebar
nodeid	nodeid
nodepie	nodepie
open_tree	open_tree
package-ggtree	ggtree
phylopic	phylopic
print.beastList	print.beastList
reroot	reroot-methods
reroot,beast-method	reroot-methods
reroot,phylo-method	reroot-methods
rescale_tree	rescale_tree
revts	revts
rm.singleton.newick	rm.singleton.newick
rotate	rotate
rotateTreePoints.df	rotateTreePoints.df
rotate_tree	rotate_tree
scaleClade	scaleClade
scale_color	scale_color-methods
scale_color,beast-method	scale_color-methods
scale_color,paml_rst-method	scale_color-methods
scale_color,phylo-method	scale_color-methods
scale_color,treedata-method	scale_color-methods
scale_x_ggtree	scale_x_ggtree
StatBalance	ggtree-ggproto
StatHilight	ggtree-ggproto
stat_balance	stat_balance
stat_hilight	stat_hilight
subview	subview
theme_inset	theme_inset
theme_transparent	theme_transparent
theme_tree	theme_tree
theme_tree2	theme_tree2
viewClade	viewClade
xlim_expand	xlim_expand
xlim_tree	xlim_tree
